Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005522A_C01 KMC005522A_c01
(402 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_177046.1| putative nuclear matrix constituent protein 1 (... 72 1e-12
ref|NP_563924.1| putative nuclear matrix constituent protein; al... 69 2e-11
ref|NP_563923.1| putative nuclear matrix constituent protein; pr... 69 2e-11
gb|AAK74016.1| At1g13220/F3F19_25 [Arabidopsis thaliana] gi|2330... 66 9e-11
dbj|BAC10761.1| putative nuclear matrix constituent protein 1 [O... 49 1e-05
>ref|NP_177046.1| putative nuclear matrix constituent protein 1 (NMCP1); protein id:
At1g68790.1 [Arabidopsis thaliana]
gi|25404777|pir||F96712 hypothetical protein F14K14.10
[imported] - Arabidopsis thaliana
gi|12324133|gb|AAG52034.1|AC011914_4 putative nuclear
matrix constituent protein 1 (NMCP1); 58331-62556
[Arabidopsis thaliana]
Length = 1085
Score = 72.4 bits (176), Expect = 1e-12
Identities = 30/44 (68%), Positives = 39/44 (88%)
Frame = +1
Query: 271 DDWMKFREAGLLDEAEMQRKDQEALYEKVSRLERELFDYQYNMG 402
DDW KF+E GLLDEA ++RKD++AL EK+ +LE+ELFDYQ+NMG
Sbjct: 39 DDWQKFKEVGLLDEASLERKDRDALIEKILKLEKELFDYQHNMG 82
>ref|NP_563924.1| putative nuclear matrix constituent protein; alternative splicing
isoform supported by protein homology and gene
predictions [Arabidopsis thaliana]
gi|22329530|ref|NP_683302.1| putative nuclear matrix
constituent protein; protein id: At1g13220.2
[Arabidopsis thaliana] gi|25518674|pir||G86266
hypothetical protein F3F19.25 - Arabidopsis thaliana
gi|4850405|gb|AAD31075.1|AC007357_24 Similar to
gb|D64087 nuclear matrix constituent protein 1 (NMCP1)
from Daucus carota. [Arabidopsis thaliana]
Length = 1128
Score = 68.6 bits (166), Expect = 2e-11
Identities = 29/46 (63%), Positives = 39/46 (84%)
Frame = +1
Query: 265 NLDDWMKFREAGLLDEAEMQRKDQEALYEKVSRLERELFDYQYNMG 402
++ DW +FRE GLL+EA M++KDQEAL EK+S LE+EL+ YQ+NMG
Sbjct: 59 DMGDWRRFREVGLLNEASMEKKDQEALLEKISTLEKELYGYQHNMG 104
>ref|NP_563923.1| putative nuclear matrix constituent protein; protein id:
At1g13220.1 [Arabidopsis thaliana]
Length = 391
Score = 68.6 bits (166), Expect = 2e-11
Identities = 29/46 (63%), Positives = 39/46 (84%)
Frame = +1
Query: 265 NLDDWMKFREAGLLDEAEMQRKDQEALYEKVSRLERELFDYQYNMG 402
++ DW +FRE GLL+EA M++KDQEAL EK+S LE+EL+ YQ+NMG
Sbjct: 72 DMGDWRRFREVGLLNEASMEKKDQEALLEKISTLEKELYGYQHNMG 117
>gb|AAK74016.1| At1g13220/F3F19_25 [Arabidopsis thaliana]
gi|23308351|gb|AAN18145.1| At1g13220/F3F19_25
[Arabidopsis thaliana]
Length = 391
Score = 66.2 bits (160), Expect = 9e-11
Identities = 28/46 (60%), Positives = 38/46 (81%)
Frame = +1
Query: 265 NLDDWMKFREAGLLDEAEMQRKDQEALYEKVSRLERELFDYQYNMG 402
++ DW + RE GLL+EA M++KDQEAL EK+S LE+EL+ YQ+NMG
Sbjct: 72 DMGDWRRLREVGLLNEASMEKKDQEALLEKISTLEKELYGYQHNMG 117
>dbj|BAC10761.1| putative nuclear matrix constituent protein 1 [Oryza sativa
(japonica cultivar-group)]
Length = 987
Score = 49.3 bits (116), Expect = 1e-05
Identities = 24/51 (47%), Positives = 34/51 (66%)
Frame = +1
Query: 250 GFEAGNLDDWMKFREAGLLDEAEMQRKDQEALYEKVSRLERELFDYQYNMG 402
G AG+ W K REAG DE ++R+D+ AL +SRLE E++ YQ+N+G
Sbjct: 22 GAAAGDDAIWSKLREAGF-DEESLKRRDKAALIAYISRLESEIYQYQHNLG 71
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 402,269,706
Number of Sequences: 1393205
Number of extensions: 10265144
Number of successful extensions: 62054
Number of sequences better than 10.0: 682
Number of HSP's better than 10.0 without gapping: 47423
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60156
length of database: 448,689,247
effective HSP length: 109
effective length of database: 296,829,902
effective search space used: 7123917648
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
