Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005520A_C01 KMC005520A_c01
(544 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_567209.1| expressed protein; protein id: At4g01050.1, sup... 55 4e-07
pir||H85013 hypothetical protein AT4g01050 [imported] - Arabidop... 55 4e-07
emb|CAC87810.2| Tic62 protein [Pisum sativum] 50 2e-05
ref|NP_608605.1| CG10869-PA [Drosophila melanogaster] gi|2294545... 45 6e-04
gb|AAN72050.1| Unknown protein [Arabidopsis thaliana] 45 7e-04
>ref|NP_567209.1| expressed protein; protein id: At4g01050.1, supported by cDNA:
gi_15982914, supported by cDNA: gi_16323193 [Arabidopsis
thaliana] gi|15982915|gb|AAL09804.1| AT4g01050/F2N1_31
[Arabidopsis thaliana] gi|16323194|gb|AAL15331.1|
AT4g01050/F2N1_31 [Arabidopsis thaliana]
gi|21700911|gb|AAM70579.1| AT4g01050/F2N1_31
[Arabidopsis thaliana]
Length = 466
Score = 55.5 bits (132), Expect = 4e-07
Identities = 32/73 (43%), Positives = 44/73 (59%), Gaps = 1/73 (1%)
Frame = -2
Query: 522 AAESTVQIAEAAPDTVSEP-KVDVVAASLAPEINSVPKTEDKAEPVPKQPKSLSPYPYYP 346
A +TV P+ V EP V + A++A ++ + P TE +A+P P + LSPY YP
Sbjct: 396 ATTTTVDKPVPEPEPVPEPVPVPAIEAAVAAQVITEP-TETEAKPKPHS-RPLSPYASYP 453
Query: 345 DFKPPTSPTPSQP 307
D KPP+SP PSQP
Sbjct: 454 DLKPPSSPMPSQP 466
>pir||H85013 hypothetical protein AT4g01050 [imported] - Arabidopsis thaliana
gi|7267602|emb|CAB80914.1| hypothetical protein
[Arabidopsis thaliana]
Length = 457
Score = 55.5 bits (132), Expect = 4e-07
Identities = 32/73 (43%), Positives = 44/73 (59%), Gaps = 1/73 (1%)
Frame = -2
Query: 522 AAESTVQIAEAAPDTVSEP-KVDVVAASLAPEINSVPKTEDKAEPVPKQPKSLSPYPYYP 346
A +TV P+ V EP V + A++A ++ + P TE +A+P P + LSPY YP
Sbjct: 387 ATTTTVDKPVPEPEPVPEPVPVPAIEAAVAAQVITEP-TETEAKPKPHS-RPLSPYASYP 444
Query: 345 DFKPPTSPTPSQP 307
D KPP+SP PSQP
Sbjct: 445 DLKPPSSPMPSQP 457
>emb|CAC87810.2| Tic62 protein [Pisum sativum]
Length = 534
Score = 50.1 bits (118), Expect = 2e-05
Identities = 28/68 (41%), Positives = 42/68 (61%), Gaps = 1/68 (1%)
Frame = -2
Query: 507 VQIAEAAPDTVSEPKVDVVAASLAPEINSV-PKTEDKAEPVPKQPKSLSPYPYYPDFKPP 331
VQ A+ A + + P +VVA E+ S+ P+ E ++PV K + LSPY Y D KPP
Sbjct: 346 VQKADTATVSNTGPSANVVA-----EVPSIAPQKETASKPVAKTEQPLSPYTAYDDLKPP 400
Query: 330 TSPTPSQP 307
+SP+P++P
Sbjct: 401 SSPSPTKP 408
Score = 47.8 bits (112), Expect = 9e-05
Identities = 26/73 (35%), Positives = 39/73 (52%)
Frame = -2
Query: 525 PAAESTVQIAEAAPDTVSEPKVDVVAASLAPEINSVPKTEDKAEPVPKQPKSLSPYPYYP 346
P+ + + I++A P +S S EI+ + +T + K +SLSPY YP
Sbjct: 408 PSEKKQINISDAVPTPISSD-----TPSSIQEIDGISQTTSSS----KGKESLSPYAAYP 458
Query: 345 DFKPPTSPTPSQP 307
D KPP+SP+PS P
Sbjct: 459 DLKPPSSPSPSVP 471
Score = 44.3 bits (103), Expect = 0.001
Identities = 29/76 (38%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
Frame = -2
Query: 534 AASPAAESTVQIAEAAPDTVSEPKVDVVAASLAPEINSVPKTEDKAEPVPKQPKS--LSP 361
AA P + + + P T + VV +S P SV T E +PKS LSP
Sbjct: 455 AAYPDLKPPSSPSPSVPTTSLSKRDTVVVSSNGPAQLSVEDTPKNEEQHLHEPKSRPLSP 514
Query: 360 YPYYPDFKPPTSPTPS 313
Y Y D KPP SP+PS
Sbjct: 515 YAMYEDLKPPASPSPS 530
>ref|NP_608605.1| CG10869-PA [Drosophila melanogaster] gi|22945457|gb|AAF51359.2|
CG10869-PA [Drosophila melanogaster]
Length = 659
Score = 45.1 bits (105), Expect = 6e-04
Identities = 32/84 (38%), Positives = 41/84 (48%), Gaps = 7/84 (8%)
Frame = -2
Query: 543 DAAAASPAAESTVQIAEAAPDTVSEPKVDVVAASLAPEINSVPKTED--KAEPVPK---- 382
+ AAA PAAE + AEA P V EP A APE P E+ AEPVP+
Sbjct: 79 EGAAAEPAAEPPAEEAEAPPAPVEEPPAADPAPEPAPEPAPEPAAEEPAPAEPVPEEAAP 138
Query: 381 -QPKSLSPYPYYPDFKPPTSPTPS 313
+ + SP P + +P S TP+
Sbjct: 139 AEAAAPSPEPVGSNHEPTPSATPA 162
>gb|AAN72050.1| Unknown protein [Arabidopsis thaliana]
Length = 641
Score = 44.7 bits (104), Expect = 7e-04
Identities = 27/77 (35%), Positives = 38/77 (49%)
Frame = -2
Query: 543 DAAAASPAAESTVQIAEAAPDTVSEPKVDVVAASLAPEINSVPKTEDKAEPVPKQPKSLS 364
D +S A++ + A A +V+E V A+ PE + A P + + LS
Sbjct: 481 DTDKSSTVAKTVTETAVAT--SVTETSV----ATSVPETAVATSVTETAAPATSKMRPLS 534
Query: 363 PYPYYPDFKPPTSPTPS 313
PY Y D KPPTSPTP+
Sbjct: 535 PYAIYADLKPPTSPTPA 551
Score = 42.0 bits (97), Expect = 0.005
Identities = 26/64 (40%), Positives = 33/64 (50%), Gaps = 9/64 (14%)
Frame = -2
Query: 477 VSEPKVDVVAASLAPEINSVPKT-------EDKAEPVPK--QPKSLSPYPYYPDFKPPTS 325
V PK V + P + + P T ED+A P K +P+ LSPY Y D KPPTS
Sbjct: 333 VPPPKASVATKEVKP-VPTKPVTQEPTAPKEDEAPPKEKNVKPRPLSPYASYEDLKPPTS 391
Query: 324 PTPS 313
P P+
Sbjct: 392 PIPN 395
Score = 40.0 bits (92), Expect = 0.018
Identities = 25/74 (33%), Positives = 38/74 (50%), Gaps = 2/74 (2%)
Frame = -2
Query: 528 SPAAESTVQIAEAAPDTVSEPKVDVVA--ASLAPEINSVPKTEDKAEPVPKQPKSLSPYP 355
SP ST ++ A V +V V A + ++VP E K + K+ + LSPY
Sbjct: 391 SPIPNSTTSVSPAKSKEVDATQVPVEANVVPVPDSTSNVPVVEVK-QVEEKKERPLSPYA 449
Query: 354 YYPDFKPPTSPTPS 313
Y + KPP+SP+P+
Sbjct: 450 RYENLKPPSSPSPT 463
Score = 38.9 bits (89), Expect = 0.041
Identities = 18/37 (48%), Positives = 24/37 (64%)
Frame = -2
Query: 423 SVPKTEDKAEPVPKQPKSLSPYPYYPDFKPPTSPTPS 313
S+ ++ A+P +P+ LSPY Y D KPPTSP PS
Sbjct: 603 SLASGDNTAQP---KPRPLSPYTMYADMKPPTSPLPS 636
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 431,751,263
Number of Sequences: 1393205
Number of extensions: 9312098
Number of successful extensions: 48468
Number of sequences better than 10.0: 392
Number of HSP's better than 10.0 without gapping: 36027
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44859
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18750593680
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
