Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005516A_C01 KMC005516A_c01
(750 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_195793.1| putative protein; protein id: At5g01730.1 [Arab... 56 1e-14
gb|AAO60018.1| unknown protein [Oryza sativa (japonica cultivar-... 48 3e-12
ref|NP_181378.1| unknown protein; protein id: At2g38440.1 [Arabi... 62 3e-12
dbj|BAB92170.1| OSJNBa0016I09.22 [Oryza sativa (japonica cultiva... 44 9e-07
pir||B86414 hypothetical protein F28N24.14 - Arabidopsis thalian... 45 6e-06
>ref|NP_195793.1| putative protein; protein id: At5g01730.1 [Arabidopsis thaliana]
gi|11357831|pir||T48194 hypothetical protein F7A7.250 -
Arabidopsis thaliana gi|7327832|emb|CAB82289.1| putative
protein [Arabidopsis thaliana]
Length = 1200
Score = 55.8 bits (133), Expect(2) = 1e-14
Identities = 24/35 (68%), Positives = 32/35 (90%)
Frame = -3
Query: 583 PTPNLRVAAILEKANSIRQALAGSDEDDDADSWSD 479
P NL+VAAILEKAN++RQA+AGSD++ D+DSWS+
Sbjct: 1166 PKTNLKVAAILEKANTLRQAMAGSDDEHDSDSWSE 1200
Score = 46.2 bits (108), Expect(2) = 1e-14
Identities = 25/45 (55%), Positives = 30/45 (66%)
Frame = -2
Query: 746 VVAALD*SRLRKVSERVRPQIAPKEDEKDSLLEQIRMKSFYLKPA 612
+V +D S LRKVSE R + + DE DSLLE IR KSF L+PA
Sbjct: 1109 LVIGIDRSMLRKVSEGNRTHVGARVDENDSLLEIIRSKSFNLRPA 1153
>gb|AAO60018.1| unknown protein [Oryza sativa (japonica cultivar-group)]
Length = 2122
Score = 47.8 bits (112), Expect(2) = 3e-12
Identities = 29/57 (50%), Positives = 37/57 (64%), Gaps = 1/57 (1%)
Frame = -2
Query: 749 DVVAALD*SRLRKVSERVRPQIAPKEDEKDSLLEQIRMKSFYLKP-AVPKRPSTSWP 582
D VAA D S +RKVSE V P K +E++ LLEQIR K+F LKP + K+P+ P
Sbjct: 2026 DAVAAHDRSTMRKVSELVAPTDKSKPNERNLLLEQIRNKTFNLKPVSSAKQPTIRTP 2082
Score = 45.8 bits (107), Expect(2) = 3e-12
Identities = 24/35 (68%), Positives = 31/35 (88%)
Frame = -3
Query: 580 TPNLRVAAILEKANSIRQALAGSDEDDDADSWSDS 476
T NL+VAAI+EKAN+IRQA+ GSD D+D D+WS+S
Sbjct: 2087 TRNLKVAAIIEKANAIRQAV-GSD-DEDGDNWSES 2119
>ref|NP_181378.1| unknown protein; protein id: At2g38440.1 [Arabidopsis thaliana]
gi|7487165|pir||T02501 hypothetical protein At2g38440
[imported] - Arabidopsis thaliana
gi|3395428|gb|AAC28760.1| unknown protein [Arabidopsis
thaliana]
Length = 1421
Score = 61.6 bits (148), Expect(2) = 3e-12
Identities = 35/61 (57%), Positives = 42/61 (68%), Gaps = 1/61 (1%)
Frame = -2
Query: 749 DVVAALD*SRLRKVSERVRPQIAPKEDEKDSLLEQIRMKSFYLKPAVPKRPS-TSWPNTE 573
D VAA D +++KVSE V P I K+D+KDSLL QIR KS LKPAV RPS + P T+
Sbjct: 1308 DAVAAHDRRKMKKVSEMVHPPIKSKQDDKDSLLAQIRNKSVNLKPAVTTRPSIQTGPRTD 1367
Query: 572 L 570
L
Sbjct: 1368 L 1368
Score = 32.0 bits (71), Expect(2) = 3e-12
Identities = 15/19 (78%), Positives = 17/19 (88%)
Frame = -3
Query: 586 GPTPNLRVAAILEKANSIR 530
GP +LRVAAILEKAN+IR
Sbjct: 1363 GPRTDLRVAAILEKANTIR 1381
>dbj|BAB92170.1| OSJNBa0016I09.22 [Oryza sativa (japonica cultivar-group)]
Length = 147
Score = 44.3 bits (103), Expect(2) = 9e-07
Identities = 24/34 (70%), Positives = 26/34 (75%)
Frame = -3
Query: 580 TPNLRVAAILEKANSIRQALAGSDEDDDADSWSD 479
T N V AILEKAN+IRQA+A SDE D DSWSD
Sbjct: 114 TANSSVVAILEKANAIRQAVA-SDEGGDDDSWSD 146
Score = 30.8 bits (68), Expect(2) = 9e-07
Identities = 14/32 (43%), Positives = 21/32 (64%)
Frame = -2
Query: 671 DEKDSLLEQIRMKSFYLKPAVPKRPSTSWPNT 576
DE++ LL+QIR K+F L+ + +TS P T
Sbjct: 83 DEREELLQQIRSKTFNLRRTNASKTNTSSPTT 114
>pir||B86414 hypothetical protein F28N24.14 - Arabidopsis thaliana
gi|9502422|gb|AAF88121.1|AC021043_14 Hypothetical protein
[Arabidopsis thaliana]
Length = 1020
Score = 45.1 bits (105), Expect(2) = 6e-06
Identities = 22/40 (55%), Positives = 30/40 (75%)
Frame = -3
Query: 595 ALLGPTPNLRVAAILEKANSIRQALAGSDEDDDADSWSDS 476
A P N +++AILEKANSIRQA+A D D++D+WSD+
Sbjct: 982 ATTDPIINTKISAILEKANSIRQAVASKD-GDESDTWSDT 1020
Score = 26.9 bits (58), Expect(2) = 6e-06
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -2
Query: 677 KEDEKDSLLEQIRMKSFYLKPAVPKRPSTSWPNTE 573
KE E L+QIR + F L+P V S++ T+
Sbjct: 951 KETETGDFLQQIRTQQFNLRPVVMTTTSSATATTD 985
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 608,734,091
Number of Sequences: 1393205
Number of extensions: 12798155
Number of successful extensions: 38910
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 31528
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37675
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 36314099463
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
