Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005511A_C01 KMC005511A_c01
(513 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_180749.1| putative unconventional myosin; protein id: At2... 72 4e-12
pir||F96587 hypothetical protein T22H22.1 [imported] - Arabidops... 69 4e-11
ref|NP_175858.1| myosin, putative; protein id: At1g54560.1 [Arab... 69 4e-11
ref|NP_172349.1| putative myosin MYA1, class V (Z28389); protein... 67 9e-11
pir||T00727 myosin heavy chain PCR43 - Arabidopsis thaliana 67 2e-10
>ref|NP_180749.1| putative unconventional myosin; protein id: At2g31900.1 [Arabidopsis
thaliana] gi|25295727|pir||E84726 probable unconventional
myosin [imported] - Arabidopsis thaliana
gi|4887746|gb|AAD32282.1| putative unconventional myosin
[Arabidopsis thaliana]
Length = 1490
Score = 72.0 bits (175), Expect = 4e-12
Identities = 40/71 (56%), Positives = 51/71 (71%)
Frame = -2
Query: 512 EVISRMRVLMTEDSDNIPPNHSFLLEVDSSIPFLMEEMFRSMSDIRLSDMDVDPPPILRL 333
EVI++MR LMTEDS N+ SFLL+VDSSIPF +E++ +S +S DVDP P+LR
Sbjct: 1419 EVINQMRKLMTEDSANMT-YPSFLLDVDSSIPFSVEDVSQSFHGGNISLSDVDPSPLLRQ 1477
Query: 332 RSDFQFLLQPI 300
RSDF FL Q +
Sbjct: 1478 RSDFHFLFQTL 1488
>pir||F96587 hypothetical protein T22H22.1 [imported] - Arabidopsis thaliana
gi|3776579|gb|AAC64896.1| Strong similarity to F22O13.22
gi|3063460 myosin homolog from A. thaliana BAC
gb|AC003981. [Arabidopsis thaliana]
Length = 1556
Score = 68.6 bits (166), Expect = 4e-11
Identities = 37/68 (54%), Positives = 50/68 (73%)
Frame = -2
Query: 512 EVISRMRVLMTEDSDNIPPNHSFLLEVDSSIPFLMEEMFRSMSDIRLSDMDVDPPPILRL 333
+VI+ MRVLMTEDS+N N SFLL+ DSSIPF ++++ +SM I + DV+PPP++R
Sbjct: 1488 DVIANMRVLMTEDSNNAVSN-SFLLDDDSSIPFSVDDLSKSMERIEIG--DVEPPPLIRE 1544
Query: 332 RSDFQFLL 309
S F FLL
Sbjct: 1545 NSGFSFLL 1552
>ref|NP_175858.1| myosin, putative; protein id: At1g54560.1 [Arabidopsis thaliana]
Length = 1529
Score = 68.6 bits (166), Expect = 4e-11
Identities = 37/68 (54%), Positives = 50/68 (73%)
Frame = -2
Query: 512 EVISRMRVLMTEDSDNIPPNHSFLLEVDSSIPFLMEEMFRSMSDIRLSDMDVDPPPILRL 333
+VI+ MRVLMTEDS+N N SFLL+ DSSIPF ++++ +SM I + DV+PPP++R
Sbjct: 1461 DVIANMRVLMTEDSNNAVSN-SFLLDDDSSIPFSVDDLSKSMERIEIG--DVEPPPLIRE 1517
Query: 332 RSDFQFLL 309
S F FLL
Sbjct: 1518 NSGFSFLL 1525
>ref|NP_172349.1| putative myosin MYA1, class V (Z28389); protein id: At1g08730.1
[Arabidopsis thaliana]
Length = 1572
Score = 67.4 bits (163), Expect = 9e-11
Identities = 35/68 (51%), Positives = 50/68 (73%)
Frame = -2
Query: 512 EVISRMRVLMTEDSDNIPPNHSFLLEVDSSIPFLMEEMFRSMSDIRLSDMDVDPPPILRL 333
+VI+ MRVLMTEDS+N N SFLL+ DSSIPF ++++ +SM ++ D++PPP++R
Sbjct: 1504 DVIANMRVLMTEDSNNAVSN-SFLLDDDSSIPFSVDDLSKSMEKFEIA--DIEPPPLIRE 1560
Query: 332 RSDFQFLL 309
S F FLL
Sbjct: 1561 NSGFSFLL 1568
>pir||T00727 myosin heavy chain PCR43 - Arabidopsis thaliana
Length = 1583
Score = 66.6 bits (161), Expect = 2e-10
Identities = 35/67 (52%), Positives = 49/67 (72%)
Frame = -2
Query: 509 VISRMRVLMTEDSDNIPPNHSFLLEVDSSIPFLMEEMFRSMSDIRLSDMDVDPPPILRLR 330
VI+ MRVLMTEDS+N N SFLL+ DSSIPF ++++ +SM ++ D++PPP++R
Sbjct: 1516 VIANMRVLMTEDSNNAVSN-SFLLDDDSSIPFSVDDLSKSMEKFEIA--DIEPPPLIREN 1572
Query: 329 SDFQFLL 309
S F FLL
Sbjct: 1573 SGFSFLL 1579
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 423,393,711
Number of Sequences: 1393205
Number of extensions: 8825322
Number of successful extensions: 21702
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 21161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21650
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 16232377112
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
