KMC005508A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KMC005508A_C01 KMC005508A_c01
gagAACGTTGGATGGGTTCAACTGCCCAATGGACTTCAAATAACCTAAAGAAGTTACATC
ATGCATCACATACAAAGAGATTGAGAAATTGGGCAACTTGCAATTCAAATATATATATAT
ATATATATATATATATATATATATACACAGTAGAAATCGGAGAAAAAGTTAATTCCAAAG
ATCCTTCCTTGGTAATCTCAGAAATTTCCAGGGGAATGAAACTCAATCACCCAACCAATC
AAACTGCTGATTAAAAAGAATTAAAAGTCAAAATATATACCTAATCTTAAAGCATTCACT
GTGAGAGTCACACCCTGAGAATCTGTAGCTAGCACAAGGAGCGTGGGTGTCATTGACTTC
CTTCTCGATGTCTCATATCTGGGGCGACTTCGTTCCTAGCGGAAGCACAATTCCAGAGAG
GGCACCGGGACCGGGCATTTGTCCTAGTGGTCCACGCGAGAGAGGTC


Nr search

BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KMC005508A_C01 KMC005508A_c01
         (467 letters)

Database: nr 
           1,393,205 sequences; 448,689,247 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|EAA13113.1| ebiP1404 [Anopheles gambiae str. PEST]                  38  0.045
ref|NP_700545.1| rhoGAP protein [Plasmodium falciparum 3D7] gi|2...    38  0.059
ref|XP_283632.1| hypothetical protein XP_283632 [Mus musculus] g...    38  0.059
ref|NP_704265.1| hypothetical protein, conserved [Plasmodium fal...    37  0.078
ref|NP_704071.1| hypothetical protein [Plasmodium falciparum 3D7...    37  0.10

>gb|EAA13113.1| ebiP1404 [Anopheles gambiae str. PEST]
          Length = 53

 Score = 38.1 bits (87), Expect = 0.045
 Identities = 15/37 (40%), Positives = 24/37 (64%)
 Frame = -3

Query: 216 FPWKFLRLPRKDLWN*LFLRFLLCIYIYIYIYIYIYL 106
           + W  ++    DL+  +++   +C YIYIYIYIYIY+
Sbjct: 8   YTWVIMQFGLFDLFVYIYIYIYICKYIYIYIYIYIYI 44

 Score = 32.7 bits (73), Expect = 1.9
 Identities = 13/14 (92%), Positives = 14/14 (99%)
 Frame = +2

Query: 107 KYIYIYIYIYIYIH 148
           KYIYIYIYIYIYI+
Sbjct: 32  KYIYIYIYIYIYIY 45

 Score = 32.3 bits (72), Expect = 2.5
 Identities = 12/14 (85%), Positives = 14/14 (99%)
 Frame = -2

Query: 148 VYIYIYIYIYIYIF 107
           +YIYIYIYIYIYI+
Sbjct: 38  IYIYIYIYIYIYIY 51

 Score = 32.3 bits (72), Expect = 2.5
 Identities = 12/14 (85%), Positives = 14/14 (99%)
 Frame = -2

Query: 148 VYIYIYIYIYIYIF 107
           +YIYIYIYIYIYI+
Sbjct: 34  IYIYIYIYIYIYIY 47

 Score = 32.3 bits (72), Expect = 2.5
 Identities = 12/14 (85%), Positives = 14/14 (99%)
 Frame = -2

Query: 148 VYIYIYIYIYIYIF 107
           +YIYIYIYIYIYI+
Sbjct: 36  IYIYIYIYIYIYIY 49

 Score = 32.3 bits (72), Expect = 2.5
 Identities = 12/14 (85%), Positives = 14/14 (99%)
 Frame = -2

Query: 148 VYIYIYIYIYIYIF 107
           +YIYIYIYIYIYI+
Sbjct: 40  IYIYIYIYIYIYIY 53

 Score = 31.2 bits (69), Expect = 5.6
 Identities = 13/14 (92%), Positives = 13/14 (92%)
 Frame = +1

Query: 103 IQIYIYIYIYIYIY 144
           I IYIYIYIYIYIY
Sbjct: 38  IYIYIYIYIYIYIY 51

 Score = 31.2 bits (69), Expect = 5.6
 Identities = 13/14 (92%), Positives = 13/14 (92%)
 Frame = +1

Query: 103 IQIYIYIYIYIYIY 144
           I IYIYIYIYIYIY
Sbjct: 40  IYIYIYIYIYIYIY 53

 Score = 31.2 bits (69), Expect = 5.6
 Identities = 13/14 (92%), Positives = 13/14 (92%)
 Frame = +1

Query: 103 IQIYIYIYIYIYIY 144
           I IYIYIYIYIYIY
Sbjct: 36  IYIYIYIYIYIYIY 49

 Score = 31.2 bits (69), Expect = 5.6
 Identities = 12/16 (75%), Positives = 15/16 (93%)
 Frame = +2

Query: 101 QFKYIYIYIYIYIYIH 148
           ++ YIYIYIYIYIYI+
Sbjct: 32  KYIYIYIYIYIYIYIY 47

 Score = 30.8 bits (68), Expect = 7.3
 Identities = 12/13 (92%), Positives = 13/13 (99%)
 Frame = +2

Query: 110 YIYIYIYIYIYIH 148
           YIYIYIYIYIYI+
Sbjct: 39  YIYIYIYIYIYIY 51

 Score = 30.8 bits (68), Expect = 7.3
 Identities = 12/13 (92%), Positives = 13/13 (99%)
 Frame = +2

Query: 110 YIYIYIYIYIYIH 148
           YIYIYIYIYIYI+
Sbjct: 37  YIYIYIYIYIYIY 49

 Score = 30.8 bits (68), Expect = 7.3
 Identities = 12/13 (92%), Positives = 13/13 (99%)
 Frame = +2

Query: 110 YIYIYIYIYIYIH 148
           YIYIYIYIYIYI+
Sbjct: 41  YIYIYIYIYIYIY 53

>ref|NP_700545.1| rhoGAP protein [Plasmodium falciparum 3D7]
           gi|23494935|gb|AAN35269.1|AE014830_13 rhoGAP protein
           [Plasmodium falciparum 3D7]
          Length = 653

 Score = 37.7 bits (86), Expect = 0.059
 Identities = 19/50 (38%), Positives = 29/50 (58%)
 Frame = -3

Query: 168 LFLRFLLCIYIYIYIYIYIYLNCKLPNFSISLYVMHDVTSLGYLKSIGQL 19
           +++   + IYIYIYIY++IYL   L  F   L+V +D     Y K++  L
Sbjct: 132 IYIYIYIYIYIYIYIYLFIYLFIILFYFFFVLFVGYDTLPRKYKKNLKNL 181

 Score = 32.7 bits (73), Expect = 1.9
 Identities = 18/43 (41%), Positives = 24/43 (54%)
 Frame = -3

Query: 168 LFLRFLLCIYIYIYIYIYIYLNCKLPNFSISLYVMHDVTSLGY 40
           ++    + IYIYIYIYIYIY+   +  F I  Y    V  +GY
Sbjct: 126 IYTYMYIYIYIYIYIYIYIYIYLFIYLFIILFYFFF-VLFVGY 167

 Score = 32.0 bits (71), Expect = 3.3
 Identities = 14/25 (56%), Positives = 16/25 (64%)
 Frame = -1

Query: 182 IFGINFFSDFYCVYIYIYIYIYIYI 108
           I  I     +  +YIYIYIYIYIYI
Sbjct: 120 ILNITQIYTYMYIYIYIYIYIYIYI 144

 Score = 31.6 bits (70), Expect = 4.3
 Identities = 13/23 (56%), Positives = 17/23 (73%)
 Frame = +2

Query: 80  IEKLGNLQFKYIYIYIYIYIYIH 148
           I ++    + YIYIYIYIYIYI+
Sbjct: 123 ITQIYTYMYIYIYIYIYIYIYIY 145

 Score = 31.2 bits (69), Expect = 5.6
 Identities = 13/14 (92%), Positives = 13/14 (92%)
 Frame = +1

Query: 103 IQIYIYIYIYIYIY 144
           I IYIYIYIYIYIY
Sbjct: 134 IYIYIYIYIYIYIY 147

 Score = 31.2 bits (69), Expect = 5.6
 Identities = 16/32 (50%), Positives = 19/32 (59%)
 Frame = +2

Query: 53  VTSCITYKEIEKLGNLQFKYIYIYIYIYIYIH 148
           +T   TY  I       + YIYIYIYIYIYI+
Sbjct: 123 ITQIYTYMYI-------YIYIYIYIYIYIYIY 147

 Score = 30.4 bits (67), Expect = 9.5
 Identities = 14/37 (37%), Positives = 21/37 (55%)
 Frame = +3

Query: 36  SNNLKKLHHASHTKRLRNWATCNSNIYIYIYIYIYIY 146
           + N+  + H  +  ++  +      IYIYIYIYIYIY
Sbjct: 111 NKNIIFIFHILNITQIYTYMYIYIYIYIYIYIYIYIY 147

>ref|XP_283632.1| hypothetical protein XP_283632 [Mus musculus]
           gi|26338029|dbj|BAC32700.1| unnamed protein product [Mus
           musculus]
          Length = 137

 Score = 37.7 bits (86), Expect = 0.059
 Identities = 17/37 (45%), Positives = 25/37 (66%)
 Frame = -2

Query: 178 LELTFSPISTVYIYIYIYIYIYIFELQVAQFLNLFVC 68
           + L F+  S +YIYIYIYIYIY+  + V   + ++VC
Sbjct: 13  ISLQFTTCSCIYIYIYIYIYIYM-HMYVYMVMYVYVC 48

 Score = 32.0 bits (71), Expect = 3.3
 Identities = 12/13 (92%), Positives = 13/13 (99%)
 Frame = +2

Query: 110 YIYIYIYIYIYIH 148
           YIYIYIYIYIY+H
Sbjct: 24  YIYIYIYIYIYMH 36

 Score = 31.6 bits (70), Expect = 4.3
 Identities = 15/19 (78%), Positives = 16/19 (83%)
 Frame = +3

Query: 90  WATCNSNIYIYIYIYIYIY 146
           + TC S IYIYIYIYIYIY
Sbjct: 17  FTTC-SCIYIYIYIYIYIY 34

>ref|NP_704265.1| hypothetical protein, conserved [Plasmodium falciparum 3D7]
           gi|23499004|emb|CAD51084.1| hypothetical protein,
           conserved [Plasmodium falciparum 3D7]
          Length = 269

 Score = 37.4 bits (85), Expect = 0.078
 Identities = 16/24 (66%), Positives = 19/24 (78%)
 Frame = -3

Query: 168 LFLRFLLCIYIYIYIYIYIYLNCK 97
           LFL + + IYIYIYIYIYIY+  K
Sbjct: 170 LFLYYYIYIYIYIYIYIYIYMEYK 193

 Score = 33.1 bits (74), Expect = 1.5
 Identities = 15/21 (71%), Positives = 15/21 (71%)
 Frame = -1

Query: 170 NFFSDFYCVYIYIYIYIYIYI 108
           N F  F   YIYIYIYIYIYI
Sbjct: 166 NLFFLFLYYYIYIYIYIYIYI 186

 Score = 32.7 bits (73), Expect = 1.9
 Identities = 15/23 (65%), Positives = 16/23 (69%)
 Frame = -3

Query: 174 N*LFLRFLLCIYIYIYIYIYIYL 106
           N  FL     IYIYIYIYIYIY+
Sbjct: 166 NLFFLFLYYYIYIYIYIYIYIYI 188

 Score = 32.0 bits (71), Expect = 3.3
 Identities = 14/18 (77%), Positives = 15/18 (82%)
 Frame = +1

Query: 103 IQIYIYIYIYIYIYTQ*K 156
           I IYIYIYIYIYIY + K
Sbjct: 176 IYIYIYIYIYIYIYMEYK 193

 Score = 31.2 bits (69), Expect = 5.6
 Identities = 12/15 (80%), Positives = 14/15 (93%)
 Frame = +2

Query: 104 FKYIYIYIYIYIYIH 148
           + YIYIYIYIYIYI+
Sbjct: 173 YYYIYIYIYIYIYIY 187

 Score = 31.2 bits (69), Expect = 5.6
 Identities = 12/18 (66%), Positives = 15/18 (82%)
 Frame = +2

Query: 110 YIYIYIYIYIYIHSRNRR 163
           YIYIYIYIYIYI+   ++
Sbjct: 177 YIYIYIYIYIYIYMEYKK 194

 Score = 31.2 bits (69), Expect = 5.6
 Identities = 16/26 (61%), Positives = 19/26 (72%), Gaps = 1/26 (3%)
 Frame = +2

Query: 74  KEIE-KLGNLQFKYIYIYIYIYIYIH 148
           KEI  K  NL F ++Y YIYIYIYI+
Sbjct: 158 KEINVKDPNLFFLFLYYYIYIYIYIY 183

 Score = 30.8 bits (68), Expect = 7.3
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = -2

Query: 148 VYIYIYIYIYIYIFELQVAQFLNLFV 71
           +Y YIYIYIYIYI+     ++  ++V
Sbjct: 172 LYYYIYIYIYIYIYIYIYMEYKKIYV 197

 Score = 30.4 bits (67), Expect = 9.5
 Identities = 12/15 (80%), Positives = 13/15 (86%)
 Frame = +2

Query: 104 FKYIYIYIYIYIYIH 148
           F Y YIYIYIYIYI+
Sbjct: 171 FLYYYIYIYIYIYIY 185

>ref|NP_704071.1| hypothetical protein [Plasmodium falciparum 3D7]
           gi|23498809|emb|CAD50886.1| hypothetical protein
           [Plasmodium falciparum 3D7]
          Length = 954

 Score = 37.0 bits (84), Expect = 0.10
 Identities = 23/55 (41%), Positives = 30/55 (53%)
 Frame = -3

Query: 165 FLRFLLCIYIYIYIYIYIYLNCKLPNFSISLYVMHDVTSLGYLKSIGQLNPSNVL 1
           FL   L I+IYIYIY YI  N K   F I L  +  +  L YL  I  ++ +N+L
Sbjct: 270 FLHLSLGIFIYIYIYKYIKQNYKSIEFFIFLNNLKKIKQL-YLDQIPHMDKANIL 323

  Database: nr
    Posted date:  Apr 1, 2003  2:05 AM
  Number of letters in database: 448,689,247
  Number of sequences in database:  1,393,205
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 406,112,650
Number of Sequences: 1393205
Number of extensions: 8795900
Number of successful extensions: 35630
Number of sequences better than 10.0: 114
Number of HSP's better than 10.0 without gapping: 22857
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28815
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 12232797444
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)


EST assemble image


clone accession position
1 MPDL019a09_f AV777439 1 329
2 SPDL033b05_f BP054036 4 467
3 MPDL091a10_f AV781225 10 438




Lotus japonicus
Kazusa DNA Research Institute