KMC005508A_c01
[Fasta Sequence]
[Nr Search]
[EST assemble image]
Fasta Sequence
>KMC005508A_C01 KMC005508A_c01
gagAACGTTGGATGGGTTCAACTGCCCAATGGACTTCAAATAACCTAAAGAAGTTACATC
ATGCATCACATACAAAGAGATTGAGAAATTGGGCAACTTGCAATTCAAATATATATATAT
ATATATATATATATATATATATATACACAGTAGAAATCGGAGAAAAAGTTAATTCCAAAG
ATCCTTCCTTGGTAATCTCAGAAATTTCCAGGGGAATGAAACTCAATCACCCAACCAATC
AAACTGCTGATTAAAAAGAATTAAAAGTCAAAATATATACCTAATCTTAAAGCATTCACT
GTGAGAGTCACACCCTGAGAATCTGTAGCTAGCACAAGGAGCGTGGGTGTCATTGACTTC
CTTCTCGATGTCTCATATCTGGGGCGACTTCGTTCCTAGCGGAAGCACAATTCCAGAGAG
GGCACCGGGACCGGGCATTTGTCCTAGTGGTCCACGCGAGAGAGGTC
Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005508A_C01 KMC005508A_c01
(467 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|EAA13113.1| ebiP1404 [Anopheles gambiae str. PEST] 38 0.045
ref|NP_700545.1| rhoGAP protein [Plasmodium falciparum 3D7] gi|2... 38 0.059
ref|XP_283632.1| hypothetical protein XP_283632 [Mus musculus] g... 38 0.059
ref|NP_704265.1| hypothetical protein, conserved [Plasmodium fal... 37 0.078
ref|NP_704071.1| hypothetical protein [Plasmodium falciparum 3D7... 37 0.10
>gb|EAA13113.1| ebiP1404 [Anopheles gambiae str. PEST]
Length = 53
Score = 38.1 bits (87), Expect = 0.045
Identities = 15/37 (40%), Positives = 24/37 (64%)
Frame = -3
Query: 216 FPWKFLRLPRKDLWN*LFLRFLLCIYIYIYIYIYIYL 106
+ W ++ DL+ +++ +C YIYIYIYIYIY+
Sbjct: 8 YTWVIMQFGLFDLFVYIYIYIYICKYIYIYIYIYIYI 44
Score = 32.7 bits (73), Expect = 1.9
Identities = 13/14 (92%), Positives = 14/14 (99%)
Frame = +2
Query: 107 KYIYIYIYIYIYIH 148
KYIYIYIYIYIYI+
Sbjct: 32 KYIYIYIYIYIYIY 45
Score = 32.3 bits (72), Expect = 2.5
Identities = 12/14 (85%), Positives = 14/14 (99%)
Frame = -2
Query: 148 VYIYIYIYIYIYIF 107
+YIYIYIYIYIYI+
Sbjct: 38 IYIYIYIYIYIYIY 51
Score = 32.3 bits (72), Expect = 2.5
Identities = 12/14 (85%), Positives = 14/14 (99%)
Frame = -2
Query: 148 VYIYIYIYIYIYIF 107
+YIYIYIYIYIYI+
Sbjct: 34 IYIYIYIYIYIYIY 47
Score = 32.3 bits (72), Expect = 2.5
Identities = 12/14 (85%), Positives = 14/14 (99%)
Frame = -2
Query: 148 VYIYIYIYIYIYIF 107
+YIYIYIYIYIYI+
Sbjct: 36 IYIYIYIYIYIYIY 49
Score = 32.3 bits (72), Expect = 2.5
Identities = 12/14 (85%), Positives = 14/14 (99%)
Frame = -2
Query: 148 VYIYIYIYIYIYIF 107
+YIYIYIYIYIYI+
Sbjct: 40 IYIYIYIYIYIYIY 53
Score = 31.2 bits (69), Expect = 5.6
Identities = 13/14 (92%), Positives = 13/14 (92%)
Frame = +1
Query: 103 IQIYIYIYIYIYIY 144
I IYIYIYIYIYIY
Sbjct: 38 IYIYIYIYIYIYIY 51
Score = 31.2 bits (69), Expect = 5.6
Identities = 13/14 (92%), Positives = 13/14 (92%)
Frame = +1
Query: 103 IQIYIYIYIYIYIY 144
I IYIYIYIYIYIY
Sbjct: 40 IYIYIYIYIYIYIY 53
Score = 31.2 bits (69), Expect = 5.6
Identities = 13/14 (92%), Positives = 13/14 (92%)
Frame = +1
Query: 103 IQIYIYIYIYIYIY 144
I IYIYIYIYIYIY
Sbjct: 36 IYIYIYIYIYIYIY 49
Score = 31.2 bits (69), Expect = 5.6
Identities = 12/16 (75%), Positives = 15/16 (93%)
Frame = +2
Query: 101 QFKYIYIYIYIYIYIH 148
++ YIYIYIYIYIYI+
Sbjct: 32 KYIYIYIYIYIYIYIY 47
Score = 30.8 bits (68), Expect = 7.3
Identities = 12/13 (92%), Positives = 13/13 (99%)
Frame = +2
Query: 110 YIYIYIYIYIYIH 148
YIYIYIYIYIYI+
Sbjct: 39 YIYIYIYIYIYIY 51
Score = 30.8 bits (68), Expect = 7.3
Identities = 12/13 (92%), Positives = 13/13 (99%)
Frame = +2
Query: 110 YIYIYIYIYIYIH 148
YIYIYIYIYIYI+
Sbjct: 37 YIYIYIYIYIYIY 49
Score = 30.8 bits (68), Expect = 7.3
Identities = 12/13 (92%), Positives = 13/13 (99%)
Frame = +2
Query: 110 YIYIYIYIYIYIH 148
YIYIYIYIYIYI+
Sbjct: 41 YIYIYIYIYIYIY 53
>ref|NP_700545.1| rhoGAP protein [Plasmodium falciparum 3D7]
gi|23494935|gb|AAN35269.1|AE014830_13 rhoGAP protein
[Plasmodium falciparum 3D7]
Length = 653
Score = 37.7 bits (86), Expect = 0.059
Identities = 19/50 (38%), Positives = 29/50 (58%)
Frame = -3
Query: 168 LFLRFLLCIYIYIYIYIYIYLNCKLPNFSISLYVMHDVTSLGYLKSIGQL 19
+++ + IYIYIYIY++IYL L F L+V +D Y K++ L
Sbjct: 132 IYIYIYIYIYIYIYIYLFIYLFIILFYFFFVLFVGYDTLPRKYKKNLKNL 181
Score = 32.7 bits (73), Expect = 1.9
Identities = 18/43 (41%), Positives = 24/43 (54%)
Frame = -3
Query: 168 LFLRFLLCIYIYIYIYIYIYLNCKLPNFSISLYVMHDVTSLGY 40
++ + IYIYIYIYIYIY+ + F I Y V +GY
Sbjct: 126 IYTYMYIYIYIYIYIYIYIYIYLFIYLFIILFYFFF-VLFVGY 167
Score = 32.0 bits (71), Expect = 3.3
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = -1
Query: 182 IFGINFFSDFYCVYIYIYIYIYIYI 108
I I + +YIYIYIYIYIYI
Sbjct: 120 ILNITQIYTYMYIYIYIYIYIYIYI 144
Score = 31.6 bits (70), Expect = 4.3
Identities = 13/23 (56%), Positives = 17/23 (73%)
Frame = +2
Query: 80 IEKLGNLQFKYIYIYIYIYIYIH 148
I ++ + YIYIYIYIYIYI+
Sbjct: 123 ITQIYTYMYIYIYIYIYIYIYIY 145
Score = 31.2 bits (69), Expect = 5.6
Identities = 13/14 (92%), Positives = 13/14 (92%)
Frame = +1
Query: 103 IQIYIYIYIYIYIY 144
I IYIYIYIYIYIY
Sbjct: 134 IYIYIYIYIYIYIY 147
Score = 31.2 bits (69), Expect = 5.6
Identities = 16/32 (50%), Positives = 19/32 (59%)
Frame = +2
Query: 53 VTSCITYKEIEKLGNLQFKYIYIYIYIYIYIH 148
+T TY I + YIYIYIYIYIYI+
Sbjct: 123 ITQIYTYMYI-------YIYIYIYIYIYIYIY 147
Score = 30.4 bits (67), Expect = 9.5
Identities = 14/37 (37%), Positives = 21/37 (55%)
Frame = +3
Query: 36 SNNLKKLHHASHTKRLRNWATCNSNIYIYIYIYIYIY 146
+ N+ + H + ++ + IYIYIYIYIYIY
Sbjct: 111 NKNIIFIFHILNITQIYTYMYIYIYIYIYIYIYIYIY 147
>ref|XP_283632.1| hypothetical protein XP_283632 [Mus musculus]
gi|26338029|dbj|BAC32700.1| unnamed protein product [Mus
musculus]
Length = 137
Score = 37.7 bits (86), Expect = 0.059
Identities = 17/37 (45%), Positives = 25/37 (66%)
Frame = -2
Query: 178 LELTFSPISTVYIYIYIYIYIYIFELQVAQFLNLFVC 68
+ L F+ S +YIYIYIYIYIY+ + V + ++VC
Sbjct: 13 ISLQFTTCSCIYIYIYIYIYIYM-HMYVYMVMYVYVC 48
Score = 32.0 bits (71), Expect = 3.3
Identities = 12/13 (92%), Positives = 13/13 (99%)
Frame = +2
Query: 110 YIYIYIYIYIYIH 148
YIYIYIYIYIY+H
Sbjct: 24 YIYIYIYIYIYMH 36
Score = 31.6 bits (70), Expect = 4.3
Identities = 15/19 (78%), Positives = 16/19 (83%)
Frame = +3
Query: 90 WATCNSNIYIYIYIYIYIY 146
+ TC S IYIYIYIYIYIY
Sbjct: 17 FTTC-SCIYIYIYIYIYIY 34
>ref|NP_704265.1| hypothetical protein, conserved [Plasmodium falciparum 3D7]
gi|23499004|emb|CAD51084.1| hypothetical protein,
conserved [Plasmodium falciparum 3D7]
Length = 269
Score = 37.4 bits (85), Expect = 0.078
Identities = 16/24 (66%), Positives = 19/24 (78%)
Frame = -3
Query: 168 LFLRFLLCIYIYIYIYIYIYLNCK 97
LFL + + IYIYIYIYIYIY+ K
Sbjct: 170 LFLYYYIYIYIYIYIYIYIYMEYK 193
Score = 33.1 bits (74), Expect = 1.5
Identities = 15/21 (71%), Positives = 15/21 (71%)
Frame = -1
Query: 170 NFFSDFYCVYIYIYIYIYIYI 108
N F F YIYIYIYIYIYI
Sbjct: 166 NLFFLFLYYYIYIYIYIYIYI 186
Score = 32.7 bits (73), Expect = 1.9
Identities = 15/23 (65%), Positives = 16/23 (69%)
Frame = -3
Query: 174 N*LFLRFLLCIYIYIYIYIYIYL 106
N FL IYIYIYIYIYIY+
Sbjct: 166 NLFFLFLYYYIYIYIYIYIYIYI 188
Score = 32.0 bits (71), Expect = 3.3
Identities = 14/18 (77%), Positives = 15/18 (82%)
Frame = +1
Query: 103 IQIYIYIYIYIYIYTQ*K 156
I IYIYIYIYIYIY + K
Sbjct: 176 IYIYIYIYIYIYIYMEYK 193
Score = 31.2 bits (69), Expect = 5.6
Identities = 12/15 (80%), Positives = 14/15 (93%)
Frame = +2
Query: 104 FKYIYIYIYIYIYIH 148
+ YIYIYIYIYIYI+
Sbjct: 173 YYYIYIYIYIYIYIY 187
Score = 31.2 bits (69), Expect = 5.6
Identities = 12/18 (66%), Positives = 15/18 (82%)
Frame = +2
Query: 110 YIYIYIYIYIYIHSRNRR 163
YIYIYIYIYIYI+ ++
Sbjct: 177 YIYIYIYIYIYIYMEYKK 194
Score = 31.2 bits (69), Expect = 5.6
Identities = 16/26 (61%), Positives = 19/26 (72%), Gaps = 1/26 (3%)
Frame = +2
Query: 74 KEIE-KLGNLQFKYIYIYIYIYIYIH 148
KEI K NL F ++Y YIYIYIYI+
Sbjct: 158 KEINVKDPNLFFLFLYYYIYIYIYIY 183
Score = 30.8 bits (68), Expect = 7.3
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = -2
Query: 148 VYIYIYIYIYIYIFELQVAQFLNLFV 71
+Y YIYIYIYIYI+ ++ ++V
Sbjct: 172 LYYYIYIYIYIYIYIYIYMEYKKIYV 197
Score = 30.4 bits (67), Expect = 9.5
Identities = 12/15 (80%), Positives = 13/15 (86%)
Frame = +2
Query: 104 FKYIYIYIYIYIYIH 148
F Y YIYIYIYIYI+
Sbjct: 171 FLYYYIYIYIYIYIY 185
>ref|NP_704071.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23498809|emb|CAD50886.1| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 954
Score = 37.0 bits (84), Expect = 0.10
Identities = 23/55 (41%), Positives = 30/55 (53%)
Frame = -3
Query: 165 FLRFLLCIYIYIYIYIYIYLNCKLPNFSISLYVMHDVTSLGYLKSIGQLNPSNVL 1
FL L I+IYIYIY YI N K F I L + + L YL I ++ +N+L
Sbjct: 270 FLHLSLGIFIYIYIYKYIKQNYKSIEFFIFLNNLKKIKQL-YLDQIPHMDKANIL 323
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 406,112,650
Number of Sequences: 1393205
Number of extensions: 8795900
Number of successful extensions: 35630
Number of sequences better than 10.0: 114
Number of HSP's better than 10.0 without gapping: 22857
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28815
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 12232797444
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
EST assemble image
|
|
|
|
clone |
accession |
position |
1 |
MPDL019a09_f |
AV777439 |
1 |
329 |
2 |
SPDL033b05_f |
BP054036 |
4 |
467 |
3 |
MPDL091a10_f |
AV781225 |
10 |
438 |
|
Lotus japonicus
Kazusa DNA Research Institute