Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005504A_C01 KMC005504A_c01
(769 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB90402.1| P0432B10.23 [Oryza sativa (japonica cultivar-gro... 132 5e-30
ref|NP_189958.1| lipid-transfer protein-like protein; protein id... 115 5e-25
gb|AAM66942.1| lipid-transfer protein-like protein [Arabidopsis ... 114 1e-24
ref|NP_565637.1| expressed protein; protein id: At2g27130.1, sup... 112 8e-24
gb|AAM67343.1| unknown [Arabidopsis thaliana] 110 2e-23
>dbj|BAB90402.1| P0432B10.23 [Oryza sativa (japonica cultivar-group)]
Length = 187
Score = 132 bits (332), Expect = 5e-30
Identities = 77/173 (44%), Positives = 105/173 (60%), Gaps = 8/173 (4%)
Frame = -1
Query: 766 MATITTTTTRVVAFA-ALVLALACHGMSAQSLAPESASAPSPAG---VDCFTALTNVSDC 599
MA T V A A A+V+A+ GM+A ++P A AP+PAG C A+ N+SDC
Sbjct: 1 MALTVRLHTAVAAVAVAVVVAM---GMAAAQMSP--AGAPAPAGGISPACMDAVLNMSDC 55
Query: 598 LTFVEAGSNLTKPDKGCCPEFAGLIESNPICLCQLL-GKPDFVGIKINLNKAIKLPSVCG 422
LT+V GS KPD+ CCPE AGL+ES P+CLCQLL G I ++ +A+ LP +CG
Sbjct: 56 LTYVMNGSTARKPDEPCCPELAGLLESKPVCLCQLLAGGASSYDISVDYKRAMALPGICG 115
Query: 421 VDTPPVSTCSVIGVPVSLPPSSE---GLAPGGSATSPSNAPSSGGPSPSSDEA 272
+ PPV+ C+++GVPV + PS+ GL P P +PS+ PS SS+ A
Sbjct: 116 LAAPPVTACALLGVPVPMAPSASPMAGLGPSTEPQMPEKSPSA-SPSESSNHA 167
>ref|NP_189958.1| lipid-transfer protein-like protein; protein id: At3g43720.1,
supported by cDNA: 8461., supported by cDNA:
gi_15028170, supported by cDNA: gi_19310840 [Arabidopsis
thaliana] gi|11358490|pir||T47408 lipid-transfer-like
protein - Arabidopsis thaliana
gi|7362772|emb|CAB83144.1| lipid-transfer-like protein
[Arabidopsis thaliana] gi|15028171|gb|AAK76582.1|
putative lipid transfer protein [Arabidopsis thaliana]
gi|19310841|gb|AAL85151.1| putative lipid-transfer
protein [Arabidopsis thaliana]
Length = 193
Score = 115 bits (289), Expect = 5e-25
Identities = 73/197 (37%), Positives = 100/197 (50%), Gaps = 4/197 (2%)
Frame = -1
Query: 736 VVAFAALVLALACHGMSAQSLAPESASAPSPAGVDCFTALTNVSDCLTFVEAGSN--LTK 563
V+A +V +L H + ++P S + +P DC L N++ CL++V G K
Sbjct: 6 VIAVVLIVASLTGHVSAQMDMSPSSGPSGAP---DCMANLMNMTGCLSYVTVGEGGGAAK 62
Query: 562 PDKGCCPEFAGLIESNPICLCQLLG--KPDFVGIKINLNKAIKLPSVCGVDTPPVSTCSV 389
PDK CCP AGL+ES+P CLC LL +GIKI+ KA+KLP VCGV TP S CS+
Sbjct: 63 PDKTCCPALAGLVESSPQCLCYLLSGDMAAQLGIKIDKAKALKLPGVCGVITPDPSLCSL 122
Query: 388 IGVPVSLPPSSEGLAPGGSATSPSNAPSSGGPSPSSDEAAVGTSGNKNGASGIQAFSLPT 209
G+PV P +A G SP+ AP S S E+ G + + G A S
Sbjct: 123 FGIPVGAP-----VAMGDEGASPAYAPG----SMSGAESPGGFGSGPSASRGSDAPSSAP 173
Query: 208 FIFALSTLFVSTFF*FY 158
+ L+ + F FY
Sbjct: 174 YSLFLNLIIFPLAFAFY 190
>gb|AAM66942.1| lipid-transfer protein-like protein [Arabidopsis thaliana]
Length = 193
Score = 114 bits (286), Expect = 1e-24
Identities = 73/197 (37%), Positives = 100/197 (50%), Gaps = 4/197 (2%)
Frame = -1
Query: 736 VVAFAALVLALACHGMSAQSLAPESASAPSPAGVDCFTALTNVSDCLTFVEAGSN--LTK 563
V+A +V +L H + ++P S + +P DC L N++ CL++V G K
Sbjct: 6 VIAVVLIVASLTGHVSAQMDMSPSSGPSGAP---DCMANLMNMTGCLSYVTVGEGGGAAK 62
Query: 562 PDKGCCPEFAGLIESNPICLCQLLG--KPDFVGIKINLNKAIKLPSVCGVDTPPVSTCSV 389
PDK CCP AGL+ES+P CLC LL +GIKI+ KA+KLP VCGV TP S CS+
Sbjct: 63 PDKTCCPALAGLVESSPQCLCYLLSGDMAAQLGIKIDKAKALKLPGVCGVITPDPSLCSL 122
Query: 388 IGVPVSLPPSSEGLAPGGSATSPSNAPSSGGPSPSSDEAAVGTSGNKNGASGIQAFSLPT 209
G+PV P +A G SP+ AP S S E+ G + + G A S
Sbjct: 123 FGIPVGAP-----VAMGDEGASPAYAPG----SMSGAESPGGFGSGPSASRGSDAPSSAP 173
Query: 208 FIFALSTLFVSTFF*FY 158
+ L+ + F FY
Sbjct: 174 YSRFLNLIIFPLAFAFY 190
>ref|NP_565637.1| expressed protein; protein id: At2g27130.1, supported by cDNA:
8450. [Arabidopsis thaliana] gi|20197416|gb|AAC77871.2|
expressed protein [Arabidopsis thaliana]
Length = 176
Score = 112 bits (279), Expect = 8e-24
Identities = 56/143 (39%), Positives = 83/143 (57%), Gaps = 3/143 (2%)
Frame = -1
Query: 745 TTRVVAFAALVLALACHGMSAQSLAPESASAPSPAGVDCFTALTNVSDCLTFVEAGSNLT 566
TT +A L+ C G S + P +A PS + V+C ++ NVSDC ++V+ GSN
Sbjct: 3 TTNTLAVLLLLFLSLCSGQSPPAPEPIAADGPS-SPVNCLVSMLNVSDCFSYVQVGSNEI 61
Query: 565 KPDKGCCPEFAGLIESNPICLCQLLG---KPDFVGIKINLNKAIKLPSVCGVDTPPVSTC 395
KP+ CCPE AG+++S+P C+C L G P F G+K++ +A +L ++CGV P S C
Sbjct: 62 KPEAACCPELAGMVQSSPECVCNLYGGGASPRF-GVKLDKQRAEQLSTICGVKAPSPSLC 120
Query: 394 SVIGVPVSLPPSSEGLAPGGSAT 326
SV+G P P SE + G +
Sbjct: 121 SVLGFPTISPAGSEDSSSGSEGS 143
>gb|AAM67343.1| unknown [Arabidopsis thaliana]
Length = 177
Score = 110 bits (275), Expect = 2e-23
Identities = 55/144 (38%), Positives = 81/144 (56%), Gaps = 3/144 (2%)
Frame = -1
Query: 748 TTTRVVAFAALVLALACHGMSAQSLAPESASAPSPAGVDCFTALTNVSDCLTFVEAGSNL 569
TT + L L C G S + P +A PS + +C ++ NVSDC ++V+ GSN
Sbjct: 3 TTNTLAVLLLLFLVSLCSGQSPPAPEPIAADGPS-SPTNCLVSMLNVSDCFSYVQVGSNE 61
Query: 568 TKPDKGCCPEFAGLIESNPICLCQLLG---KPDFVGIKINLNKAIKLPSVCGVDTPPVST 398
KP+ CCPE AG+++S+P C+C L G P F G+K++ +A +L ++CGV P S
Sbjct: 62 IKPEAACCPELAGMVQSSPECVCNLYGGGASPXF-GVKLDKQRAEQLSTICGVKAPSPSL 120
Query: 397 CSVIGVPVSLPPSSEGLAPGGSAT 326
CSV+G P P SE + G +
Sbjct: 121 CSVLGFPTISPAGSEDSSSGSEGS 144
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 708,794,170
Number of Sequences: 1393205
Number of extensions: 17413518
Number of successful extensions: 146247
Number of sequences better than 10.0: 367
Number of HSP's better than 10.0 without gapping: 90378
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135574
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 37534933228
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
