Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005503A_C01 KMC005503A_c01
(614 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_200394.1| serine/threonine-specific kinase like protein; ... 81 1e-14
ref|NP_195934.1| receptor like protein kinase; protein id: At5g0... 78 1e-13
ref|NP_190906.1| receptor lectin kinase -like protein; protein i... 71 1e-11
pdb|1HQL|A Chain A, The Xenograft Antigen In Complex With The B4... 70 2e-11
pdb|1GNZ|A Chain A, Lectin I-B4 From Griffonia Simplicifolia (Gs... 70 2e-11
>ref|NP_200394.1| serine/threonine-specific kinase like protein; protein id:
At5g55830.1 [Arabidopsis thaliana]
Length = 681
Score = 80.9 bits (198), Expect = 1e-14
Identities = 52/172 (30%), Positives = 81/172 (46%)
Frame = +2
Query: 95 HFYFPDFSLNNNPRLEHDVKLLGSAKLSDQKGALQIPHESQETDLKHLAGRGLYSFPIRL 274
+F F F++ N + LG + L + G + + E D +G +Y+ PIR
Sbjct: 32 NFTFKSFTIRN-------LTFLGDSHL--RNGVVGLTRELGVPDTS--SGTVIYNNPIRF 80
Query: 275 LDPSTKTPASFETTFAFQLHNSTTSVSGGGSGGGGVGGAAAADVGGGGSGLTFMIVQDEF 454
DP + T ASF T F+F + N D G GL F + D
Sbjct: 81 YDPDSNTTASFSTHFSFTVQNLNP------------------DPTSAGDGLAFFLSHDND 122
Query: 455 TVGRSRPWLGMLNDACENAYKAVAVEFDTRMSPEFGDPNDNHVGVNLGSIIS 610
T+G +LG++N + + VA+EFDT++ P F DPN NH+G+++ S+ S
Sbjct: 123 TLGSPGGYLGLVNSSQPMKNRFVAIEFDTKLDPHFNDPNGNHIGLDVDSLNS 174
>ref|NP_195934.1| receptor like protein kinase; protein id: At5g03140.1, supported by
cDNA: gi_20260625 [Arabidopsis thaliana]
gi|11346409|pir||T48335 receptor like protein kinase -
Arabidopsis thaliana gi|7413591|emb|CAB86081.1| receptor
like protein kinase [Arabidopsis thaliana]
gi|9757765|dbj|BAB08374.1| receptor lectin kinase-like
protein [Arabidopsis thaliana]
gi|20260626|gb|AAM13211.1| receptor like protein kinase
[Arabidopsis thaliana]
Length = 711
Score = 77.8 bits (190), Expect = 1e-13
Identities = 54/154 (35%), Positives = 78/154 (50%)
Frame = +2
Query: 149 VKLLGSAKLSDQKGALQIPHESQETDLKHLAGRGLYSFPIRLLDPSTKTPASFETTFAFQ 328
+KLLG A L++ G +++ E AG+ LY P++ P TK+PASF T F+F
Sbjct: 47 LKLLGDAHLNN--GTIKLTRELSVPT--STAGKALYGKPVKFRHPETKSPASFTTYFSFS 102
Query: 329 LHNSTTSVSGGGSGGGGVGGAAAADVGGGGSGLTFMIVQDEFTVGRSRPWLGMLNDACEN 508
+ N S GG GL F+I DE +G + +LG L + +
Sbjct: 103 VTNLNPSSIGG--------------------GLAFVISPDEDYLGSTGGFLG-LTEETGS 141
Query: 509 AYKAVAVEFDTRMSPEFGDPNDNHVGVNLGSIIS 610
VAVEFDT M +F D N NHVG++L +++S
Sbjct: 142 GSGFVAVEFDTLMDVQFKDVNGNHVGLDLNAVVS 175
>ref|NP_190906.1| receptor lectin kinase -like protein; protein id: At3g53380.1
[Arabidopsis thaliana] gi|11346395|pir||T45878 receptor
lectin kinase-like protein - Arabidopsis thaliana
gi|6729489|emb|CAB67645.1| receptor lectin kinase-like
protein [Arabidopsis thaliana]
Length = 715
Score = 71.2 bits (173), Expect = 1e-11
Identities = 57/179 (31%), Positives = 81/179 (44%), Gaps = 4/179 (2%)
Frame = +2
Query: 89 TKHFYFPDFSLNNNPRLEHDVKLLGSAKLSDQ----KGALQIPHESQETDLKHLAGRGLY 256
T F F +++N +KLLG A+LS+ L +P+ AG+ LY
Sbjct: 21 TTQFDFSTLAISN-------LKLLGDARLSNGIVGLTRDLSVPNSG--------AGKVLY 65
Query: 257 SFPIRLLDPSTKTPASFETTFAFQLHNSTTSVSGGGSGGGGVGGAAAADVGGGGSGLTFM 436
S PIR P T P SF + F+F + N S GGG L F+
Sbjct: 66 SNPIRFRQPGTHFPTSFSSFFSFSITNVNPSSIGGG--------------------LAFV 105
Query: 437 IVQDEFTVGRSRPWLGMLNDACENAYKAVAVEFDTRMSPEFGDPNDNHVGVNLGSIIST 613
I D ++G + LG+ + K VAVEFDT M +F D N NHVG ++ ++S+
Sbjct: 106 ISPDANSIGIAGGSLGLTGPNGSGS-KFVAVEFDTLMDVDFKDINSNHVGFDVNGVVSS 163
>pdb|1HQL|A Chain A, The Xenograft Antigen In Complex With The B4 Isolectin Of
Griffonia Simplicifolia Lectin-1 gi|18655825|pdb|1HQL|B
Chain B, The Xenograft Antigen In Complex With The B4
Isolectin Of Griffonia Simplicifolia Lectin-1
Length = 257
Score = 70.1 bits (170), Expect = 2e-11
Identities = 55/175 (31%), Positives = 84/175 (47%), Gaps = 4/175 (2%)
Frame = +2
Query: 98 FYFPDFSLNNNPRLEHDVKLLGSAKLSDQKGALQIPHESQE-TDLKHLAGRGLYSFPIRL 274
F FP+F + +E + G A + G LQ+ +Q T L+ AGR LYS P++L
Sbjct: 7 FTFPNFWSD----VEDSIIFQGDANTT--AGTLQLCKTNQYGTPLQWSAGRALYSDPVQL 60
Query: 275 LDPSTKTPASFETTFAFQLHNSTTSVSGGGSGGGGVGGAAAADVGGGGSGLTFMIVQDEF 454
D T++ ASF T F F L ++G G GL F + +
Sbjct: 61 WDNKTESVASFYTEFTFFL-----KITGNGPA----------------DGLAFFLAPPDS 99
Query: 455 TVGRSRPWLGMLNDACE---NAYKAVAVEFDTRMSPEFGDPNDNHVGVNLGSIIS 610
V + +LG+ N + + + VAVEFDT +P F +P+ H+G+N+ SI+S
Sbjct: 100 DVKDAGEYLGLFNKSTATQPSKNQVVAVEFDTWTNPNFPEPSYRHIGINVNSIVS 154
>pdb|1GNZ|A Chain A, Lectin I-B4 From Griffonia Simplicifolia (Gs I-B4)metal
Free Form
Length = 257
Score = 70.1 bits (170), Expect = 2e-11
Identities = 55/175 (31%), Positives = 84/175 (47%), Gaps = 4/175 (2%)
Frame = +2
Query: 98 FYFPDFSLNNNPRLEHDVKLLGSAKLSDQKGALQIPHESQE-TDLKHLAGRGLYSFPIRL 274
F FP+F + +E + G A + G LQ+ +Q T L+ AGR LYS P++L
Sbjct: 7 FTFPNFWSD----VEDSIIFQGDANTT--AGTLQLCKTNQYGTPLQWSAGRALYSDPVQL 60
Query: 275 LDPSTKTPASFETTFAFQLHNSTTSVSGGGSGGGGVGGAAAADVGGGGSGLTFMIVQDEF 454
D T++ ASF T F F L ++G G GL F + +
Sbjct: 61 WDNKTESVASFYTEFTFFL-----KITGNGPA----------------DGLAFFLAPPDS 99
Query: 455 TVGRSRPWLGMLNDACE---NAYKAVAVEFDTRMSPEFGDPNDNHVGVNLGSIIS 610
V + +LG+ N + + + VAVEFDT +P F +P+ H+G+N+ SI+S
Sbjct: 100 DVKDAGEYLGLFNKSTATQPSKNQVVAVEFDTWTNPNFPEPSYRHIGINVNSIVS 154
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 560,918,059
Number of Sequences: 1393205
Number of extensions: 14282702
Number of successful extensions: 392462
Number of sequences better than 10.0: 3906
Number of HSP's better than 10.0 without gapping: 96756
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 273379
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 24854530794
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
