KMC005497A_c01
[Fasta Sequence]
[Nr Search]
[EST assemble image]
Fasta Sequence
>KMC005497A_C01 KMC005497A_c01
acaccaatttaatagttaattctaatatatatataagcattAGCAAACAGACATAATAAT
GAAAAACCAATGACAAAGTAACACTTGAAATTCCATTGAAAAGTAAAAATAGAAAATCAC
TTTCTCCTATACCAATCCCTCCACAATAAGGAAAATATCAAAAAAAAAAAAAAAAAAAAA
AAACCCCACTTCAATCATATAAACAGATTAATCAGCTTTCCACAATGGGCTTTGGTGGGC
AAAGGAATATCACCACCACCGCCACTACCCACAAGATGGTCACTACCTACAACAACACTA
TCAAGCAATTTCCTCTTGGGCTGGGCCTCTGGCAGCATCAACACAACATCTCTCATGGAA
GGCCTATCTGCAGGGTTTCTGCTTGTGCAGAGCAATGCAATCCTAAGCATTGGTATCATC
TCCTCCCTTACGGAAGCACACCCGGCCCCGGCATTCTTATCCAACACATCATCAATGCCG
CCATCTTGGTGCTGGATCTGGGACCTAACCCAGTCCACAAGGCTGTTTCCATCGCCAGAT
TCTGCATCCACCGAACGTTTTCCGCATAAAATCTCCATCAACACCAACCCATAGCTGGTA
ATA
Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005497A_C01 KMC005497A_c01
(603 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_200956.1| leucine-rich receptor-like protein kinase - lik... 129 2e-29
gb|AAO17351.1| Hypothetical protein [Oryza sativa (japonica cult... 102 4e-21
ref|NP_194594.1| leucine-rich repeat transmembrane protein kinas... 97 1e-19
ref|NP_172335.1| CLAVATA1 receptor kinase( CLV1); protein id: At... 91 1e-17
gb|AAL12626.1| leucine-rich repeat receptor-like kinase F21M12.3... 81 1e-14
>ref|NP_200956.1| leucine-rich receptor-like protein kinase - like protein; protein id:
At5g61480.1 [Arabidopsis thaliana]
Length = 1041
Score = 129 bits (325), Expect = 2e-29
Identities = 64/109 (58%), Positives = 89/109 (80%), Gaps = 1/109 (0%)
Frame = -2
Query: 602 ITSYGLVLMEILCGKRSVDAESGDGNSLVDWVRSQIQHQDGGIDDVLDKNAGAGCASVRE 423
I SYG++L+EI+ GKRSV+ E G+GNS+VDWVRS+++ ++ +++VLDK+ G C+ +RE
Sbjct: 909 IYSYGVILLEIITGKRSVEPEFGEGNSIVDWVRSKLKTKED-VEEVLDKSMGRSCSLIRE 967
Query: 422 EMIPMLRIALLCTSRNPADRPSMRDVVLMLPEAQPKRKLL-DSVVVGSD 279
EM MLRIALLCTSR+P DRP MRDV+L+L EA+PKRK + D+V+V D
Sbjct: 968 EMKQMLRIALLCTSRSPTDRPPMRDVLLILQEAKPKRKTVGDNVIVVGD 1016
>gb|AAO17351.1| Hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length = 1030
Score = 102 bits (254), Expect = 4e-21
Identities = 47/107 (43%), Positives = 77/107 (71%)
Frame = -2
Query: 602 ITSYGLVLMEILCGKRSVDAESGDGNSLVDWVRSQIQHQDGGIDDVLDKNAGAGCASVRE 423
I S+G+VLME+L G+R ++ E G+ +V W+R +++ + G++++LD + G VRE
Sbjct: 907 IYSFGVVLMELLTGRRPIEPEYGESQDIVGWIRERLR-SNTGVEELLDASVGGRVDHVRE 965
Query: 422 EMIPMLRIALLCTSRNPADRPSMRDVVLMLPEAQPKRKLLDSVVVGS 282
EM+ +LR+A+LCT+++P DRP+MRDVV ML EA+P+RK + V +
Sbjct: 966 EMLLVLRVAVLCTAKSPKDRPTMRDVVTMLGEAKPRRKSSSATVAAT 1012
>ref|NP_194594.1| leucine-rich repeat transmembrane protein kinase, putative; protein
id: At4g28650.1 [Arabidopsis thaliana]
gi|7434423|pir||T10659 probable serine/threonine-specific
protein kinase (EC 2.7.1.-) T5F17.100 - Arabidopsis
thaliana gi|7269720|emb|CAB81453.1| receptor protein
kinase-like protein [Arabidopsis thaliana]
Length = 1013
Score = 97.4 bits (241), Expect = 1e-19
Identities = 49/98 (50%), Positives = 73/98 (74%)
Frame = -2
Query: 602 ITSYGLVLMEILCGKRSVDAESGDGNSLVDWVRSQIQHQDGGIDDVLDKNAGAGCASVRE 423
I SYG+VL+E+L G+R ++ E G+ +V+WVR +I+ + +++ LD N G C V+E
Sbjct: 889 IYSYGVVLLELLTGRRPLEPEFGESVDIVEWVRRKIR-DNISLEEALDPNVG-NCRYVQE 946
Query: 422 EMIPMLRIALLCTSRNPADRPSMRDVVLMLPEAQPKRK 309
EM+ +L+IALLCT++ P DRPSMRDV+ ML EA+P+RK
Sbjct: 947 EMLLVLQIALLCTTKLPKDRPSMRDVISMLGEAKPRRK 984
>ref|NP_172335.1| CLAVATA1 receptor kinase( CLV1); protein id: At1g08590.1 [Arabidopsis
thaliana] gi|7434430|pir||T00712 protein kinase homolog
F22O13.7 - Arabidopsis thaliana
gi|9802553|gb|AAF99755.1|AC003981_5 F22O13.7 [Arabidopsis
thaliana]
Length = 1029
Score = 90.5 bits (223), Expect = 1e-17
Identities = 43/98 (43%), Positives = 67/98 (67%)
Frame = -2
Query: 602 ITSYGLVLMEILCGKRSVDAESGDGNSLVDWVRSQIQHQDGGIDDVLDKNAGAGCASVRE 423
I S G+VL+E++ GK +D D +V+W+R +++ + +++V+D + C V E
Sbjct: 912 IYSLGVVLLELVTGKMPIDPSFEDSIDVVEWIRRKVKKNES-LEEVIDASIAGDCKHVIE 970
Query: 422 EMIPMLRIALLCTSRNPADRPSMRDVVLMLPEAQPKRK 309
EM+ LRIALLCT++ P DRPS+RDV+ ML EA+P+RK
Sbjct: 971 EMLLALRIALLCTAKLPKDRPSIRDVITMLAEAKPRRK 1008
>gb|AAL12626.1| leucine-rich repeat receptor-like kinase F21M12.36 [Arabidopsis
thaliana]
Length = 977
Score = 80.9 bits (198), Expect = 1e-14
Identities = 38/97 (39%), Positives = 67/97 (68%)
Frame = -2
Query: 602 ITSYGLVLMEILCGKRSVDAESGDGNSLVDWVRSQIQHQDGGIDDVLDKNAGAGCASVRE 423
+ S+G+VLME++ GK+ ++AE G+ +V+WV + ++ ++ + +++DK G RE
Sbjct: 867 VYSFGVVLMELVTGKKPIEAEFGESKDIVNWVSNNLKSKES-VMEIVDKKIGE---MYRE 922
Query: 422 EMIPMLRIALLCTSRNPADRPSMRDVVLMLPEAQPKR 312
+ + MLRIA++CT+R P RP+MR VV M+ +A+P R
Sbjct: 923 DAVKMLRIAIICTARLPGLRPTMRSVVQMIEDAEPCR 959
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 623,268,863
Number of Sequences: 1393205
Number of extensions: 16554023
Number of successful extensions: 72477
Number of sequences better than 10.0: 1101
Number of HSP's better than 10.0 without gapping: 57597
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68188
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23711793746
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
EST assemble image
|
|
|
|
clone |
accession |
position |
1 |
MPDL016b10_f |
AV777296 |
1 |
519 |
2 |
MPDL040d11_f |
AV778529 |
42 |
604 |
3 |
SPDL059d10_f |
BP055690 |
46 |
489 |
4 |
MPDL041g03_f |
AV778593 |
87 |
568 |
|
Lotus japonicus
Kazusa DNA Research Institute