KMC005497A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KMC005497A_C01 KMC005497A_c01
acaccaatttaatagttaattctaatatatatataagcattAGCAAACAGACATAATAAT
GAAAAACCAATGACAAAGTAACACTTGAAATTCCATTGAAAAGTAAAAATAGAAAATCAC
TTTCTCCTATACCAATCCCTCCACAATAAGGAAAATATCAAAAAAAAAAAAAAAAAAAAA
AAACCCCACTTCAATCATATAAACAGATTAATCAGCTTTCCACAATGGGCTTTGGTGGGC
AAAGGAATATCACCACCACCGCCACTACCCACAAGATGGTCACTACCTACAACAACACTA
TCAAGCAATTTCCTCTTGGGCTGGGCCTCTGGCAGCATCAACACAACATCTCTCATGGAA
GGCCTATCTGCAGGGTTTCTGCTTGTGCAGAGCAATGCAATCCTAAGCATTGGTATCATC
TCCTCCCTTACGGAAGCACACCCGGCCCCGGCATTCTTATCCAACACATCATCAATGCCG
CCATCTTGGTGCTGGATCTGGGACCTAACCCAGTCCACAAGGCTGTTTCCATCGCCAGAT
TCTGCATCCACCGAACGTTTTCCGCATAAAATCTCCATCAACACCAACCCATAGCTGGTA
ATA


Nr search

BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KMC005497A_C01 KMC005497A_c01
         (603 letters)

Database: nr 
           1,393,205 sequences; 448,689,247 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_200956.1| leucine-rich receptor-like protein kinase - lik...   129  2e-29
gb|AAO17351.1| Hypothetical protein [Oryza sativa (japonica cult...   102  4e-21
ref|NP_194594.1| leucine-rich repeat transmembrane protein kinas...    97  1e-19
ref|NP_172335.1| CLAVATA1 receptor kinase( CLV1); protein id: At...    91  1e-17
gb|AAL12626.1| leucine-rich repeat receptor-like kinase F21M12.3...    81  1e-14

>ref|NP_200956.1| leucine-rich receptor-like protein kinase - like protein; protein id:
            At5g61480.1 [Arabidopsis thaliana]
          Length = 1041

 Score =  129 bits (325), Expect = 2e-29
 Identities = 64/109 (58%), Positives = 89/109 (80%), Gaps = 1/109 (0%)
 Frame = -2

Query: 602  ITSYGLVLMEILCGKRSVDAESGDGNSLVDWVRSQIQHQDGGIDDVLDKNAGAGCASVRE 423
            I SYG++L+EI+ GKRSV+ E G+GNS+VDWVRS+++ ++  +++VLDK+ G  C+ +RE
Sbjct: 909  IYSYGVILLEIITGKRSVEPEFGEGNSIVDWVRSKLKTKED-VEEVLDKSMGRSCSLIRE 967

Query: 422  EMIPMLRIALLCTSRNPADRPSMRDVVLMLPEAQPKRKLL-DSVVVGSD 279
            EM  MLRIALLCTSR+P DRP MRDV+L+L EA+PKRK + D+V+V  D
Sbjct: 968  EMKQMLRIALLCTSRSPTDRPPMRDVLLILQEAKPKRKTVGDNVIVVGD 1016

>gb|AAO17351.1| Hypothetical protein [Oryza sativa (japonica cultivar-group)]
          Length = 1030

 Score =  102 bits (254), Expect = 4e-21
 Identities = 47/107 (43%), Positives = 77/107 (71%)
 Frame = -2

Query: 602  ITSYGLVLMEILCGKRSVDAESGDGNSLVDWVRSQIQHQDGGIDDVLDKNAGAGCASVRE 423
            I S+G+VLME+L G+R ++ E G+   +V W+R +++  + G++++LD + G     VRE
Sbjct: 907  IYSFGVVLMELLTGRRPIEPEYGESQDIVGWIRERLR-SNTGVEELLDASVGGRVDHVRE 965

Query: 422  EMIPMLRIALLCTSRNPADRPSMRDVVLMLPEAQPKRKLLDSVVVGS 282
            EM+ +LR+A+LCT+++P DRP+MRDVV ML EA+P+RK   + V  +
Sbjct: 966  EMLLVLRVAVLCTAKSPKDRPTMRDVVTMLGEAKPRRKSSSATVAAT 1012

>ref|NP_194594.1| leucine-rich repeat transmembrane protein kinase, putative; protein
            id: At4g28650.1 [Arabidopsis thaliana]
            gi|7434423|pir||T10659 probable serine/threonine-specific
            protein kinase (EC 2.7.1.-) T5F17.100 - Arabidopsis
            thaliana gi|7269720|emb|CAB81453.1| receptor protein
            kinase-like protein [Arabidopsis thaliana]
          Length = 1013

 Score = 97.4 bits (241), Expect = 1e-19
 Identities = 49/98 (50%), Positives = 73/98 (74%)
 Frame = -2

Query: 602  ITSYGLVLMEILCGKRSVDAESGDGNSLVDWVRSQIQHQDGGIDDVLDKNAGAGCASVRE 423
            I SYG+VL+E+L G+R ++ E G+   +V+WVR +I+  +  +++ LD N G  C  V+E
Sbjct: 889  IYSYGVVLLELLTGRRPLEPEFGESVDIVEWVRRKIR-DNISLEEALDPNVG-NCRYVQE 946

Query: 422  EMIPMLRIALLCTSRNPADRPSMRDVVLMLPEAQPKRK 309
            EM+ +L+IALLCT++ P DRPSMRDV+ ML EA+P+RK
Sbjct: 947  EMLLVLQIALLCTTKLPKDRPSMRDVISMLGEAKPRRK 984

>ref|NP_172335.1| CLAVATA1 receptor kinase( CLV1); protein id: At1g08590.1 [Arabidopsis
            thaliana] gi|7434430|pir||T00712 protein kinase homolog
            F22O13.7 - Arabidopsis thaliana
            gi|9802553|gb|AAF99755.1|AC003981_5 F22O13.7 [Arabidopsis
            thaliana]
          Length = 1029

 Score = 90.5 bits (223), Expect = 1e-17
 Identities = 43/98 (43%), Positives = 67/98 (67%)
 Frame = -2

Query: 602  ITSYGLVLMEILCGKRSVDAESGDGNSLVDWVRSQIQHQDGGIDDVLDKNAGAGCASVRE 423
            I S G+VL+E++ GK  +D    D   +V+W+R +++  +  +++V+D +    C  V E
Sbjct: 912  IYSLGVVLLELVTGKMPIDPSFEDSIDVVEWIRRKVKKNES-LEEVIDASIAGDCKHVIE 970

Query: 422  EMIPMLRIALLCTSRNPADRPSMRDVVLMLPEAQPKRK 309
            EM+  LRIALLCT++ P DRPS+RDV+ ML EA+P+RK
Sbjct: 971  EMLLALRIALLCTAKLPKDRPSIRDVITMLAEAKPRRK 1008

>gb|AAL12626.1| leucine-rich repeat receptor-like kinase F21M12.36 [Arabidopsis
            thaliana]
          Length = 977

 Score = 80.9 bits (198), Expect = 1e-14
 Identities = 38/97 (39%), Positives = 67/97 (68%)
 Frame = -2

Query: 602  ITSYGLVLMEILCGKRSVDAESGDGNSLVDWVRSQIQHQDGGIDDVLDKNAGAGCASVRE 423
            + S+G+VLME++ GK+ ++AE G+   +V+WV + ++ ++  + +++DK  G      RE
Sbjct: 867  VYSFGVVLMELVTGKKPIEAEFGESKDIVNWVSNNLKSKES-VMEIVDKKIGE---MYRE 922

Query: 422  EMIPMLRIALLCTSRNPADRPSMRDVVLMLPEAQPKR 312
            + + MLRIA++CT+R P  RP+MR VV M+ +A+P R
Sbjct: 923  DAVKMLRIAIICTARLPGLRPTMRSVVQMIEDAEPCR 959

  Database: nr
    Posted date:  Apr 1, 2003  2:05 AM
  Number of letters in database: 448,689,247
  Number of sequences in database:  1,393,205
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 623,268,863
Number of Sequences: 1393205
Number of extensions: 16554023
Number of successful extensions: 72477
Number of sequences better than 10.0: 1101
Number of HSP's better than 10.0 without gapping: 57597
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68188
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23711793746
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)


EST assemble image


clone accession position
1 MPDL016b10_f AV777296 1 519
2 MPDL040d11_f AV778529 42 604
3 SPDL059d10_f BP055690 46 489
4 MPDL041g03_f AV778593 87 568




Lotus japonicus
Kazusa DNA Research Institute