>KMC005495A_C01 KMC005495A_c01
GATCAAAGATTGGCTCAAATTAAGATTTGAAAACCCTACTTCAGCCACACCCTGACTTTG
TCATTAACAATAGTCAAGGAATCAATTTGGTCAATGCAAGAGACAAGTAGCTAAGAAAAA
ACAAGTTGAATGCGTAATAAACATATGAGGGGTCAAACAGAACCAGTGTTGATTCAATCA
ACAGACTTGAGTTCACAAAACAATACGCAAGAAGGTGATATTTTGAAACTAAGCATGCTC
TTCATAAAGGTAAGGGTAAAAAATCTCAAAGAAAAATGGGCAACACCTAGTATTTAGAGA
TTACAAACAGGCTTCTGAGGTCATCATTTCTTGTCTTCCTTTTCTGCTTCAGCAGCTCTC
TTCTGACGGGCACCAAAGTGGCGTTGGTTTGTGCGTTCAAGGCGAAGCTTGTAGTATGCC
TTAAATGCCTTCATTTCATCAGTGATCTTTACAAGCTCCACAGGTGGCCTCTCCTTCACA
ATAGGCAAGTATTGACCCTGAACCTGTGTGGCATTTGCACGTTCCTCAGGACTAGAATCG
CCAGCCTTGACCTTGCGAGCCCGTCTTGGGAACACAACCAGCTTGGCCTTGTATGTTTTC
AACC

BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KMC005495A_C01 KMC005495A_c01
         (604 letters)

Database: nr 
           1,393,205 sequences; 448,689,247 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_190470.1| 60S ribosomal protein L13, BBC1 protein; protei...   150  2e-35
gb|AAM61490.1| 60S ribosomal protein L13, BBC1 protein [Arabidop...   147  8e-35
dbj|BAA92738.1| ESTs AU077873(S1878),D40121(S1878) correspond to...   145  4e-34
emb|CAC81268.1| putative cold-induced protein [Oryza sativa (ind...   143  2e-33
gb|AAL93210.1|AF487458_1 BBC1-like protein [Triticum aestivum]        140  1e-32

>ref|NP_190470.1| 60S ribosomal protein L13, BBC1 protein; protein id: At3g49010.2,
           supported by cDNA: 12182., supported by cDNA:
           gi_15292840, supported by cDNA: gi_16226380, supported
           by cDNA: gi_17473729, supported by cDNA: gi_19310762,
           supported by cDNA: gi_20148532 [Arabidopsis thaliana]
           gi|730526|sp|P41127|RL13_ARATH 60S ribosomal protein L13
           (BBC1 protein homolog) gi|480787|pir||S37271 ribosomal
           protein L13 - Arabidopsis thaliana
           gi|404166|emb|CAA53005.1| BBC1 protein [Arabidopsis
           thaliana] gi|6522565|emb|CAB62009.1| 60S ribosomal
           protein L13, BBC1 protein [Arabidopsis thaliana]
           gi|15292841|gb|AAK92791.1| putative 60S ribosomal
           protein L13, BBC1 protein [Arabidopsis thaliana]
           gi|16226381|gb|AAL16152.1|AF428384_1 AT3g49010/T2J13_150
           [Arabidopsis thaliana] gi|17473730|gb|AAL38313.1| 60S
           ribosomal protein L13, BBC1 protein [Arabidopsis
           thaliana] gi|19310763|gb|AAL85112.1| putative 60S
           ribosomal protein L13, BBC1 protein [Arabidopsis
           thaliana] gi|20148533|gb|AAM10157.1| 60S ribosomal
           protein L13, BBC1 protein [Arabidopsis thaliana]
          Length = 206

 Score =  150 bits (378), Expect = 2e-35
 Identities = 73/92 (79%), Positives = 84/92 (90%)
 Frame = -3

Query: 602 LKTYKAKLVVFPRRARKVKAGDSSPEERANATQVQGQYLPIVKERPPVELVKITDEMKAF 423
           LKTYK KLV+FPRRARKVKAGDS+PEE ANATQVQG YLPIV+E+P +ELVK+T EMK+F
Sbjct: 115 LKTYKTKLVIFPRRARKVKAGDSTPEELANATQVQGDYLPIVREKPTMELVKLTSEMKSF 174

Query: 422 KAYYKLRLERTNQRHFGARQKRAAEAEKEDKK 327
           KA+ K+RLERTN+RH GAR KRAAEAEKE+KK
Sbjct: 175 KAFDKIRLERTNKRHAGARAKRAAEAEKEEKK 206

>gb|AAM61490.1| 60S ribosomal protein L13, BBC1 protein [Arabidopsis thaliana]
          Length = 206

 Score =  147 bits (372), Expect = 8e-35
 Identities = 72/92 (78%), Positives = 83/92 (89%)
 Frame = -3

Query: 602 LKTYKAKLVVFPRRARKVKAGDSSPEERANATQVQGQYLPIVKERPPVELVKITDEMKAF 423
           LKTYK KLV+FPRRARKVKAGDS+PEE ANATQVQG YLPIV+E+P +ELVK+T EMK+F
Sbjct: 115 LKTYKTKLVIFPRRARKVKAGDSTPEELANATQVQGDYLPIVREKPTMELVKLTSEMKSF 174

Query: 422 KAYYKLRLERTNQRHFGARQKRAAEAEKEDKK 327
            A+ K+RLERTN+RH GAR KRAAEAEKE+KK
Sbjct: 175 MAFDKIRLERTNKRHAGARAKRAAEAEKEEKK 206

>dbj|BAA92738.1| ESTs AU077873(S1878),D40121(S1878) correspond to a region of the
           predicted gene.~Similar to Arabidopsis thaliana 60S
           ribosomal protein L13 (P41127) [Oryza sativa (japonica
           cultivar-group)] gi|24413953|dbj|BAC22205.1| putative
           60S ribosomal protein [Oryza sativa (japonica
           cultivar-group)]
          Length = 208

 Score =  145 bits (366), Expect = 4e-34
 Identities = 73/93 (78%), Positives = 83/93 (88%), Gaps = 1/93 (1%)
 Frame = -3

Query: 602 LKTYKAKLVVFPRRARKVKAGDSSPEERANATQVQGQYLPIVK-ERPPVELVKITDEMKA 426
           LKTYKAKLV+FPRRARKVKAGDS+PEE A ATQVQG Y+PI + E+  VE+VK+TD+MKA
Sbjct: 116 LKTYKAKLVIFPRRARKVKAGDSTPEELATATQVQGDYMPITRGEKRSVEVVKVTDDMKA 175

Query: 425 FKAYYKLRLERTNQRHFGARQKRAAEAEKEDKK 327
           FKAY KLR+ER NQRH GARQKRAAEAEKE+KK
Sbjct: 176 FKAYAKLRVERMNQRHIGARQKRAAEAEKEEKK 208

>emb|CAC81268.1| putative cold-induced protein [Oryza sativa (indica
           cultivar-group)]
          Length = 208

 Score =  143 bits (360), Expect = 2e-33
 Identities = 73/93 (78%), Positives = 82/93 (87%), Gaps = 1/93 (1%)
 Frame = -3

Query: 602 LKTYKAKLVVFPRRARKVKAGDSSPEERANATQVQGQYLPIVK-ERPPVELVKITDEMKA 426
           LKTYKAKLV+FPRRARKVKAGDS+ EE A ATQVQG Y+PI + E+  VE+VK+TDEMKA
Sbjct: 116 LKTYKAKLVIFPRRARKVKAGDSTAEELATATQVQGDYMPIARGEKRSVEVVKVTDEMKA 175

Query: 425 FKAYYKLRLERTNQRHFGARQKRAAEAEKEDKK 327
           FKAY KLR+ER NQRH GARQKRAAEAEKE+KK
Sbjct: 176 FKAYAKLRVERMNQRHVGARQKRAAEAEKEEKK 208

>gb|AAL93210.1|AF487458_1 BBC1-like protein [Triticum aestivum]
          Length = 142

 Score =  140 bits (354), Expect = 1e-32
 Identities = 71/93 (76%), Positives = 82/93 (87%), Gaps = 1/93 (1%)
 Frame = -3

Query: 602 LKTYKAKLVVFPRRARKVKAGDSSPEERANATQVQGQYLPIVK-ERPPVELVKITDEMKA 426
           LKTYKAKLV+FPRRARKVKAGDS+PEE ANATQVQG Y+PI + E+  VE+VK+T+EMK 
Sbjct: 50  LKTYKAKLVIFPRRARKVKAGDSTPEELANATQVQGDYMPIARGEKRSVEVVKVTEEMKE 109

Query: 425 FKAYYKLRLERTNQRHFGARQKRAAEAEKEDKK 327
           FKAY KLR+ER NQR  GARQK+AAEAEKE+KK
Sbjct: 110 FKAYGKLRVERMNQRQLGARQKKAAEAEKEEKK 142

  Database: nr
    Posted date:  Apr 1, 2003  2:05 AM
  Number of letters in database: 448,689,247
  Number of sequences in database:  1,393,205
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 473,225,302
Number of Sequences: 1393205
Number of extensions: 9403424
Number of successful extensions: 23073
Number of sequences better than 10.0: 102
Number of HSP's better than 10.0 without gapping: 22400
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23026
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23711793746
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

EST assemble image

clone accession position 1 MPDL016a01_f AV777286 1 604 2 MWM233h03_f AV768296 1 505

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