Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005493A_C01 KMC005493A_c01
(544 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAG10602.1|AC008030_2 Similar to DNA-directed RNA polymerase ... 90 2e-17
ref|NP_564341.1| DNA-directed RNA polymerase subunit, putative; ... 90 2e-17
gb|AAM92814.1| putative DNA-directed RNA polymerase I subunit, 5... 84 1e-15
ref|NP_113961.1| RNA polymerase I (127 kDa subunit) [Rattus norv... 47 2e-04
dbj|BAB14296.1| unnamed protein product [Homo sapiens] 46 3e-04
>gb|AAG10602.1|AC008030_2 Similar to DNA-directed RNA polymerase subunit [Arabidopsis thaliana]
Length = 1233
Score = 90.1 bits (222), Expect = 2e-17
Identities = 43/60 (71%), Positives = 51/60 (84%)
Frame = -3
Query: 527 QKLPRREIGGLPPSKAPKKVICHACLTSKGMETVAMPYVFRYLAAEFAAMNIKMTLKLNN 348
QK +EIG LPP + PKKV C++C TSKGMETVAMPYVFRYLAAE A+MNIKMTL+L++
Sbjct: 1168 QKKLIQEIGKLPPGRTPKKVTCYSCKTSKGMETVAMPYVFRYLAAELASMNIKMTLQLSD 1227
>ref|NP_564341.1| DNA-directed RNA polymerase subunit, putative; protein id:
At1g29940.1 [Arabidopsis thaliana]
gi|25518380|pir||B86423 hypothetical protein T1P2.15 -
Arabidopsis thaliana gi|12324162|gb|AAG52049.1|AC022455_3
DNA-directed RNA polymerase subunit, putative; 8546-1198
[Arabidopsis thaliana]
Length = 1114
Score = 90.1 bits (222), Expect = 2e-17
Identities = 43/60 (71%), Positives = 51/60 (84%)
Frame = -3
Query: 527 QKLPRREIGGLPPSKAPKKVICHACLTSKGMETVAMPYVFRYLAAEFAAMNIKMTLKLNN 348
QK +EIG LPP + PKKV C++C TSKGMETVAMPYVFRYLAAE A+MNIKMTL+L++
Sbjct: 1049 QKKLIQEIGKLPPGRTPKKVTCYSCKTSKGMETVAMPYVFRYLAAELASMNIKMTLQLSD 1108
>gb|AAM92814.1| putative DNA-directed RNA polymerase I subunit, 5'-partial [Oryza
sativa (japonica cultivar-group)]
Length = 855
Score = 84.0 bits (206), Expect = 1e-15
Identities = 40/62 (64%), Positives = 48/62 (76%)
Frame = -3
Query: 533 QPQKLPRREIGGLPPSKAPKKVICHACLTSKGMETVAMPYVFRYLAAEFAAMNIKMTLKL 354
+ QK +R++ GLP K PK C AC TSKGMETVAMPYVFRYLA+E AAMNIK+ L+L
Sbjct: 782 ESQKKAKRDMLGLPTVKPPKNFACQACKTSKGMETVAMPYVFRYLASELAAMNIKLELRL 841
Query: 353 NN 348
+N
Sbjct: 842 SN 843
>ref|NP_113961.1| RNA polymerase I (127 kDa subunit) [Rattus norvegicus]
gi|3914801|sp|O54888|RPA2_RAT DNA-directed RNA polymerase
I 135 kDa polypeptide (RNA polymerase I subunit 2)
(RPA135) (RNA polymerase I 127 kDa subunit)
gi|7513965|pir||T42368 DNA-directed RNA polymerase (EC
2.7.7.6) I second largest chain - rat
gi|2739048|gb|AAB94600.1| RNA polymerase I 127 kDa
subunit [Rattus norvegicus]
Length = 1135
Score = 46.6 bits (109), Expect = 2e-04
Identities = 24/48 (50%), Positives = 31/48 (64%), Gaps = 3/48 (6%)
Frame = -3
Query: 494 PPSKAP---KKVICHACLTSKGMETVAMPYVFRYLAAEFAAMNIKMTL 360
PPS + +K C C S ++TV++PYVFRY AE AAMNIK+ L
Sbjct: 1085 PPSWSAMRNRKYNCTVCGRSDSIDTVSVPYVFRYFVAELAAMNIKVKL 1132
>dbj|BAB14296.1| unnamed protein product [Homo sapiens]
Length = 714
Score = 46.2 bits (108), Expect = 3e-04
Identities = 24/48 (50%), Positives = 31/48 (64%), Gaps = 3/48 (6%)
Frame = -3
Query: 494 PPSKAP---KKVICHACLTSKGMETVAMPYVFRYLAAEFAAMNIKMTL 360
PPS + +K C C S ++TV++PYVFRY AE AAMNIK+ L
Sbjct: 664 PPSWSAMRNRKYNCTLCSRSDTIDTVSVPYVFRYFVAELAAMNIKVKL 711
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 443,220,205
Number of Sequences: 1393205
Number of extensions: 8545582
Number of successful extensions: 14760
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 14466
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14760
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18750593680
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
