Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005490A_C01 KMC005490A_c01
(509 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAF02946.1|AF092374_1 NADH dehydrogenase subunit II [Rivulus ... 33 2.5
gb|AAF02936.1|AF092369_1 NADH dehydrogenase subunit II [Cynolebi... 32 3.3
ref|NP_739816.1| NADH dehydrogenase subunit 2 [Oryzias latipes] ... 32 4.2
dbj|BAC23257.1| NADH dehydrogenase subunit 2 [Bregmaceros nectab... 32 5.5
ref|NP_008149.1|ND2_10512 NADH dehydrogenase subunit 2 [Petromyz... 32 5.5
>gb|AAF02946.1|AF092374_1 NADH dehydrogenase subunit II [Rivulus tecminae]
Length = 348
Score = 32.7 bits (73), Expect = 2.5
Identities = 14/58 (24%), Positives = 34/58 (58%)
Frame = +1
Query: 97 LQYPTIIYLRWGLSFQSHHITVS*LAFLLYNLITHYKLLSHMYIKEKQLTSLALAKSK 270
L Y ++ +L W + + ++ LAF++Y ++T L+ ++I+ + SL+++ +K
Sbjct: 178 LAYSSVAHLGWMMLVMQYKPQLAFLAFIMYIVLTAPMFLTFIFIQSTTINSLSISSTK 235
>gb|AAF02936.1|AF092369_1 NADH dehydrogenase subunit II [Cynolebias alexandri]
Length = 348
Score = 32.3 bits (72), Expect = 3.3
Identities = 31/122 (25%), Positives = 58/122 (47%), Gaps = 6/122 (4%)
Frame = +1
Query: 97 LQYPTIIYLRWGLSFQSHHITVS*LAFLLYNLITHYKLLSHMYIKEKQLTSLALAKSKYS 276
L Y +I +L W + ++ ++ LAFL+Y ++T S Y+ + +LA + +K +
Sbjct: 178 LAYSSIAHLGWVILIAHYYPPLAFLAFLIYAVMTFTLFFSFSYMCSTSMNALATSWAK-T 236
Query: 277 PLVTRPRATFAFS------FSTHLAPSFLHRCLTNQMNTCSSRI*LVSSLWAV*SHLFLS 438
P +T FS F+ ++ + LT Q T + +S+L ++ +L LS
Sbjct: 237 PFLTSLIPLVLFSLGGLPPFTGFISKWAILNELTKQSLTLMAASAALSALLSLFFYLRLS 296
Query: 439 QA 444
A
Sbjct: 297 YA 298
>ref|NP_739816.1| NADH dehydrogenase subunit 2 [Oryzias latipes]
gi|25005735|dbj|BAC23840.1| NADH dehydrogenase subunit 2
[Oryzias latipes]
Length = 350
Score = 32.0 bits (71), Expect = 4.2
Identities = 18/64 (28%), Positives = 35/64 (54%)
Frame = +1
Query: 97 LQYPTIIYLRWGLSFQSHHITVS*LAFLLYNLITHYKLLSHMYIKEKQLTSLALAKSKYS 276
L Y ++ +L W + +++ LA L+Y ++T L+ +K + SLA++ +K +
Sbjct: 178 LAYSSVAHLGWMMVVMQFSTSLTALALLMYVIMTTSAFLTFKLLKSTDMNSLAMSWAK-T 236
Query: 277 PLVT 288
P VT
Sbjct: 237 PSVT 240
>dbj|BAC23257.1| NADH dehydrogenase subunit 2 [Bregmaceros nectabanus]
Length = 348
Score = 31.6 bits (70), Expect = 5.5
Identities = 26/80 (32%), Positives = 38/80 (47%)
Frame = +1
Query: 97 LQYPTIIYLRWGLSFQSHHITVS*LAFLLYNLITHYKLLSHMYIKEKQLTSLALAKSKYS 276
L Y +I ++ W + + T+S LA +LY +T L MY SLA++ SK S
Sbjct: 178 LAYSSIAHVGWIILVIQLNQTLSLLALMLYIPMTMTVFLMLMYNSTHSYNSLAISWSKSS 237
Query: 277 PLVTRPRATFAFSFSTHLAP 336
++ A FAF L P
Sbjct: 238 MILV--MAPFAFLSLAGLPP 255
>ref|NP_008149.1|ND2_10512 NADH dehydrogenase subunit 2 [Petromyzon marinus]
gi|3122471|sp|Q35535|NU2M_PETMA NADH-ubiquinone
oxidoreductase chain 2 gi|1085194|pir||S55005 NADH2
dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 2 - sea
lamprey mitochondrion gi|515487|gb|AAB08739.1| NADH
dehydrogenase subunit 2 [Petromyzon marinus]
Length = 347
Score = 31.6 bits (70), Expect = 5.5
Identities = 24/82 (29%), Positives = 38/82 (46%)
Frame = +1
Query: 19 SPFSRWWGSLKEMPQCHHRKNFRQSSLQYPTIIYLRWGLSFQSHHITVS*LAFLLYNLIT 198
S F WG L Q RK L Y +I ++ W S + T++ L L+Y LIT
Sbjct: 162 SVFVGGWGGLN---QTQTRK-----ILAYSSIAHMGWITSMAPFNPTITWLTTLIYCLIT 213
Query: 199 HYKLLSHMYIKEKQLTSLALAK 264
++ +K ++T+L + K
Sbjct: 214 SATFINLHILKANKITALTMNK 235
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 450,893,564
Number of Sequences: 1393205
Number of extensions: 9592866
Number of successful extensions: 21846
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 21366
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21842
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15942513235
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
