Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005489A_C02 KMC005489A_c02
(566 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|O82626|ERG_ANTMA GTP-binding protein ERG gi|3676069|emb|CAA76... 53 2e-06
ref|NP_174383.1| putative GTP-binding protein, ERG; protein id: ... 52 5e-06
gb|ZP_00069347.1| hypothetical protein [Oenococcus oeni MCW] 34 1.1
gb|AAD50121.1|AF153362_1 adenylyl cyclase [Dictyostelium discoid... 33 1.9
ref|NP_417061.1| GTP-binding protein [Escherichia coli K12] gi|4... 33 2.5
>sp|O82626|ERG_ANTMA GTP-binding protein ERG gi|3676069|emb|CAA76925.1| ERG protein
[Antirrhinum majus]
Length = 423
Score = 53.1 bits (126), Expect = 2e-06
Identities = 25/32 (78%), Positives = 29/32 (90%)
Frame = -1
Query: 563 GSKIGRIGIEANEELRTIFKKQVHLILQVRLK 468
GSKIG IGIEANEELR+IFK+ VHLIL V++K
Sbjct: 392 GSKIGTIGIEANEELRSIFKRNVHLILMVKVK 423
>ref|NP_174383.1| putative GTP-binding protein, ERG; protein id: At1g30960.1
[Arabidopsis thaliana] gi|11467944|sp|O82653|ERG_ARATH
GTP-binding protein ERG gi|25403376|pir||C86435 protein
F17F8.15 [imported] - Arabidopsis thaliana
gi|9755380|gb|AAF98187.1|AC000107_10 F17F8.15
[Arabidopsis thaliana]
Length = 437
Score = 52.0 bits (123), Expect = 5e-06
Identities = 25/32 (78%), Positives = 28/32 (87%)
Frame = -1
Query: 563 GSKIGRIGIEANEELRTIFKKQVHLILQVRLK 468
G KIGRIGIEANEELR I ++VHLILQV+LK
Sbjct: 406 GCKIGRIGIEANEELRRIMNRKVHLILQVKLK 437
>gb|ZP_00069347.1| hypothetical protein [Oenococcus oeni MCW]
Length = 362
Score = 34.3 bits (77), Expect = 1.1
Identities = 26/101 (25%), Positives = 45/101 (43%), Gaps = 5/101 (4%)
Frame = +1
Query: 187 FFKLIKLDE*DSLNIRNQIV-KGHKSLPPSSLMNQTSFSIAMVLYDHPHLKHGLVSFMDL 363
F K ++ + + I +I+ K +L L+ + I ++Y H H+ ++
Sbjct: 203 FLKQSLTEQSEEILINKKILFKQANALQKDLLLKRVPTEICRLVYKHRHINVACGPWIIH 262
Query: 364 QGQSKTHPFGLLNTAWHG----VAKKVHSQQESICPVSYLS 474
QG GL T WH + + Q+++CPVSYLS
Sbjct: 263 QGTQA----GLKTTNWHWRLMIILELEEFDQDNLCPVSYLS 299
>gb|AAD50121.1|AF153362_1 adenylyl cyclase [Dictyostelium discoideum]
Length = 2123
Score = 33.5 bits (75), Expect = 1.9
Identities = 29/81 (35%), Positives = 41/81 (49%), Gaps = 6/81 (7%)
Frame = -1
Query: 242 IWLRMFKESYSSSFMSLKKVKGKFLY-----IFWVYLLVI*SSHVL*KC-PFL*PSTLCD 81
+W R+FK + SFMSL + F Y +F +YL +I HVL PFL P + +
Sbjct: 275 MWCRIFKLEWVISFMSL--ISAMFHYTIRRDMFPLYLSIIGFYHVLTYSEPFLEPFRVNN 332
Query: 80 IKSLLFCNVILCIATYMINVL 18
SL+ + + IA Y N L
Sbjct: 333 FFSLILTVICIFIAFYPKNKL 353
>ref|NP_417061.1| GTP-binding protein [Escherichia coli K12]
gi|462020|sp|P06616|ERA_ECOLI GTP-binding protein era
gi|7428552|pir||RGECGT GTP-binding protein era -
Escherichia coli (strain K-12) gi|5822055|pdb|1EGA|A
Chain A, Crystal Structure Of A Widely Conserved Gtpase
Era gi|5822056|pdb|1EGA|B Chain B, Crystal Structure Of
A Widely Conserved Gtpase Era gi|416295|gb|AAA03242.1|
era gi|987641|dbj|BAA10913.1| GTP binding protein
[Escherichia coli] gi|998396|gb|AAB34156.1| GTPase, Era
[Escherichia coli, Peptide Mutant, 301 aa]
gi|1033155|gb|AAA79828.1| GTP-binding protein
gi|1788919|gb|AAC75619.1| GTP-binding protein
[Escherichia coli K12]
Length = 301
Score = 33.1 bits (74), Expect = 2.5
Identities = 15/32 (46%), Positives = 24/32 (74%)
Frame = -1
Query: 563 GSKIGRIGIEANEELRTIFKKQVHLILQVRLK 468
G+KI IGIEA ++++ +F+ VHL L V++K
Sbjct: 251 GAKIKTIGIEARKDMQEMFEAPVHLELWVKVK 282
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 507,229,634
Number of Sequences: 1393205
Number of extensions: 10782672
Number of successful extensions: 20684
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 20286
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20683
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20669577624
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
