Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005488A_C01 KMC005488A_c01
(483 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|Q04690|NF1_MOUSE Neurofibromin (Neurofibromatosis-related pro... 35 0.56
ref|NP_036741.1| neurofibromatosis type 1 [Rattus norvegicus] gi... 35 0.56
pir||I54352 neurofibromin - mouse (fragment) gi|309453|gb|AAA681... 35 0.56
gb|ZP_00035671.1| hypothetical protein [Enterococcus faecium] 33 1.3
gb|AAA74897.1| neurofibromatosis type 1 protein 32 2.8
>sp|Q04690|NF1_MOUSE Neurofibromin (Neurofibromatosis-related protein NF-1)
Length = 2841
Score = 34.7 bits (78), Expect = 0.56
Identities = 18/59 (30%), Positives = 33/59 (55%)
Frame = -1
Query: 390 IVSYLLFEVVLAINSRRMWRLSLKSSLRWLCFVMPSRSSMQIRYRRSDFMSCHVFFLHG 214
I S +LF + + S +M LS L+WL ++ R+ ++ +++D SCH +L+G
Sbjct: 573 ISSQMLFYICKKLTSHQM--LSSTEILKWLREILICRNKFLLKNKQADRSSCHSLYLYG 629
>ref|NP_036741.1| neurofibromatosis type 1 [Rattus norvegicus]
gi|13959414|sp|P97526|NF1_RAT Neurofibromin
(Neurofibromatosis-related protein NF-1)
gi|2143870|pir||JC5196 neurofibromin I - rat
gi|1841314|dbj|BAA08141.1| neurofibromin [Rattus
norvegicus]
Length = 2820
Score = 34.7 bits (78), Expect = 0.56
Identities = 18/59 (30%), Positives = 33/59 (55%)
Frame = -1
Query: 390 IVSYLLFEVVLAINSRRMWRLSLKSSLRWLCFVMPSRSSMQIRYRRSDFMSCHVFFLHG 214
I S +LF + + S +M LS L+WL ++ R+ ++ +++D SCH +L+G
Sbjct: 573 ISSQMLFYICKKLTSHQM--LSSTEILKWLREILICRNKFLLKNKQADRSSCHSLYLYG 629
>pir||I54352 neurofibromin - mouse (fragment) gi|309453|gb|AAA68132.1|
neurofibromin
Length = 2825
Score = 34.7 bits (78), Expect = 0.56
Identities = 18/59 (30%), Positives = 33/59 (55%)
Frame = -1
Query: 390 IVSYLLFEVVLAINSRRMWRLSLKSSLRWLCFVMPSRSSMQIRYRRSDFMSCHVFFLHG 214
I S +LF + + S +M LS L+WL ++ R+ ++ +++D SCH +L+G
Sbjct: 557 ISSQMLFYICKKLTSHQM--LSSTEILKWLREILICRNKFLLKNKQADRSSCHSLYLYG 613
>gb|ZP_00035671.1| hypothetical protein [Enterococcus faecium]
Length = 195
Score = 33.5 bits (75), Expect = 1.3
Identities = 16/33 (48%), Positives = 21/33 (63%)
Frame = -1
Query: 231 VFFLHGGSKVL*IVRRACQEFIPFCTIRFRLVL 133
+FF+ GGS V QEF+PFCTI +R V+
Sbjct: 113 IFFIAGGSAVY-------QEFLPFCTILYRTVI 138
>gb|AAA74897.1| neurofibromatosis type 1 protein
Length = 2485
Score = 32.3 bits (72), Expect = 2.8
Identities = 17/59 (28%), Positives = 31/59 (51%)
Frame = -1
Query: 390 IVSYLLFEVVLAINSRRMWRLSLKSSLRWLCFVMPSRSSMQIRYRRSDFMSCHVFFLHG 214
I S +LF + + S +M LS L+WL ++ R+ ++ +++D SCH +G
Sbjct: 239 ISSQMLFYICKKLTSHQM--LSSTEILKWLREILICRNKFLLKNKQADRSSCHFLLFYG 295
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 405,397,034
Number of Sequences: 1393205
Number of extensions: 7928423
Number of successful extensions: 16311
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 16055
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16311
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 13689082854
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
