Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005487A_C01 KMC005487A_c01
(643 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_568892.1| FtsH protease, putative; protein id: At5g58870.... 150 2e-35
ref|NP_566889.1| FtsH protease, putative; protein id: At3g47060.... 142 5e-33
gb|EAA06131.1| agCP13667 [Anopheles gambiae str. PEST] 42 0.007
ref|XP_243979.1| hypothetical protein XP_243979 [Rattus norvegicus] 42 0.007
dbj|BAA85417.1| similar to dJ522J7.2 (Z98885) [Oryza sativa (jap... 42 0.007
>ref|NP_568892.1| FtsH protease, putative; protein id: At5g58870.1, supported by
cDNA: gi_16648972 [Arabidopsis thaliana]
gi|9759220|dbj|BAB09632.1| cell division protein FtsH
[Arabidopsis thaliana] gi|16648973|gb|AAL24338.1| cell
division protein FtsH [Arabidopsis thaliana]
Length = 806
Score = 150 bits (378), Expect = 2e-35
Identities = 91/199 (45%), Positives = 118/199 (58%), Gaps = 11/199 (5%)
Frame = +2
Query: 56 SPLTYNNSKTHYLNSHANSRVNLIDPCRFVPDSCRSRCPVS-------QTFCLWGGNGVR 214
S L Y ++ + + + R N P RFV +S + P S + F LW G +
Sbjct: 24 SSLLYLHASSFFRDRSFGFRQN---PNRFVSNSS-IQLPQSVPGSINQERFNLWQGFSRK 79
Query: 215 RWVCRSTSETDSAAGSPSSGSGEEKTGEGKVVDDAGSPSSGSDRRREKQGKGGWWW---- 382
+ S + + G + S E GEGK D G KQGK WW
Sbjct: 80 KSTSSSRTIVNCQEGDQKASSSE---GEGKTNKDKG----------RKQGKNELWWSKGK 126
Query: 383 RWQWQPIIQAQEIGALLLQLGIVIFVMRVIRPGIPLPGSEPLAPTTVVSVPYSEFLSRVN 562
+WQW+PIIQAQEIG +LLQLGIV+FV+R++RPGIPLPGSEP TT +SVPYS+FLS+VN
Sbjct: 127 KWQWKPIIQAQEIGVMLLQLGIVMFVVRLLRPGIPLPGSEPRTQTTFMSVPYSDFLSKVN 186
Query: 563 SDQVRKVEVDGVHILFKLK 619
+D+V+KVEVDG H+LFKLK
Sbjct: 187 NDEVQKVEVDGFHVLFKLK 205
>ref|NP_566889.1| FtsH protease, putative; protein id: At3g47060.1, supported by
cDNA: gi_20466541 [Arabidopsis thaliana]
gi|11357297|pir||T45642 FtsH metalloproteinase-like
protein - Arabidopsis thaliana
gi|6522587|emb|CAB61952.1| FtsH metalloprotease-like
protein [Arabidopsis thaliana]
gi|20466542|gb|AAM20588.1| FtsH metalloprotease-like
protein [Arabidopsis thaliana]
gi|23198320|gb|AAN15687.1| FtsH metalloprotease-like
protein [Arabidopsis thaliana]
Length = 802
Score = 142 bits (357), Expect = 5e-33
Identities = 82/172 (47%), Positives = 103/172 (59%), Gaps = 3/172 (1%)
Frame = +2
Query: 113 RVNLIDPCRFVPDSCRSRCPVSQTFCLWGGNGVRRWVCRSTSETDSAAGSPSSGSGEEKT 292
RV +P RFV +S Q L W S ++ E +
Sbjct: 38 RVYRQNPNRFVSNSITLPLQKKQVTVLRNHERFNLWDGFSRKKSRLVVNCQEDDQNESSS 97
Query: 293 GEGKVVDDAGSPSSGSDRRREKQGKGGWWWR---WQWQPIIQAQEIGALLLQLGIVIFVM 463
E + + S + S+R+REK+ WW + WQWQPIIQAQ IG LLLQL +V+FVM
Sbjct: 98 EEE---ESSQSTPAKSERKREKKEDKVWWSKGKKWQWQPIIQAQGIGVLLLQLSVVMFVM 154
Query: 464 RVIRPGIPLPGSEPLAPTTVVSVPYSEFLSRVNSDQVRKVEVDGVHILFKLK 619
R++RPGIPLPGSEP TT VSVPYSEFLS+VNS+QV+KVEVDGV +LFKL+
Sbjct: 155 RLLRPGIPLPGSEPRIQTTFVSVPYSEFLSKVNSNQVQKVEVDGVQVLFKLR 206
>gb|EAA06131.1| agCP13667 [Anopheles gambiae str. PEST]
Length = 683
Score = 42.0 bits (97), Expect = 0.007
Identities = 26/76 (34%), Positives = 34/76 (44%), Gaps = 8/76 (10%)
Frame = -1
Query: 397 LPLPPPPPPTLPLLL----PPPVRTGARRTGVINHLT----LASFLLAGTGARRTGGGIS 242
LP PPPPPPT+P L+ PPP +H T +A + G G GGG+
Sbjct: 581 LPNPPPPPPTVPSLMQWTPPPPAAADTMVPAPSHHHTYGAGVAPPTMGGWGKGAAGGGLI 640
Query: 241 LAGGTTYPSSDSVSAP 194
+G P+ V P
Sbjct: 641 ASGWPPAPNGGFVPPP 656
>ref|XP_243979.1| hypothetical protein XP_243979 [Rattus norvegicus]
Length = 231
Score = 42.0 bits (97), Expect = 0.007
Identities = 36/119 (30%), Positives = 52/119 (43%), Gaps = 3/119 (2%)
Frame = -3
Query: 629 PQQASA*TRCEPHQPPPSAPGHC*PYSKTHCKAHSQPSSEPEAP-TPVTESRAG*PA*RK 453
P++A+A +PHQP PSAP S PS+ P +P +P++ P
Sbjct: 24 PERAAARQPHQPHQPGPSAP--------------SAPSARPVSPISPISLVSPISPI--- 66
Query: 452 SQSPIAKAEPQFPALELWVATATATTTHPSPASPSSGPNR--SSANRRHQPPYPRQFSP 282
SPI+ P P + A P P++PS+ P S A + HQP P +P
Sbjct: 67 --SPISLVSPISPISPISQAPQPPQPHQPGPSAPSASPLSPISQAPQPHQPGPPAPSAP 123
>dbj|BAA85417.1| similar to dJ522J7.2 (Z98885) [Oryza sativa (japonica
cultivar-group)]
Length = 952
Score = 42.0 bits (97), Expect = 0.007
Identities = 32/105 (30%), Positives = 41/105 (38%), Gaps = 2/105 (1%)
Frame = -1
Query: 625 NRLQLEQDVNPINLHLPHLVTVDPTQKLTVRHTHNRRRSQRLRPR*RNPGPDNPHNENHN 446
NRL + NP ++ P TQ HTH + PR PH+ +H+
Sbjct: 45 NRLHGALEPNPASMWAPRKKNTKRTQS----HTHPDPFPAKATPR--------PHHHHHH 92
Query: 445 PQLQKQSP--NFLRLNYGLPLPPPPPPTLPLLLPPPVRTGARRTG 317
L P + + PPPPPP PPP T ARR G
Sbjct: 93 LLLPPPPPRPSMAKTRKAAAAPPPPPP------PPPAETPARRKG 131
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 685,790,800
Number of Sequences: 1393205
Number of extensions: 19896708
Number of successful extensions: 209581
Number of sequences better than 10.0: 1397
Number of HSP's better than 10.0 without gapping: 100850
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176838
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 27007650415
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
