Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005485A_C01 KMC005485A_c01
(682 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL09733.1| At1g76160/T23E18_10 [Arabidopsis thaliana] 226 2e-58
ref|NP_177743.1| pectinesterase (pectin methylesterase), putativ... 226 2e-58
gb|AAM97070.1| pectinesterase, putative [Arabidopsis thaliana] g... 225 4e-58
emb|CAA65634.1| PS60 [Nicotiana tabacum] 221 5e-57
ref|NP_564479.1| pectinesterase (pectin methylesterase), putativ... 219 3e-56
>gb|AAL09733.1| At1g76160/T23E18_10 [Arabidopsis thaliana]
Length = 541
Score = 226 bits (576), Expect = 2e-58
Identities = 102/127 (80%), Positives = 117/127 (91%)
Frame = -3
Query: 680 DFRSFVEIVFQNNENIVQSYHLDGYSFFVVGMDGGTWTASSRNQYNLRDAVARCTTQVYP 501
D+R+FVEI+F+N+E+IVQS+HLDGYSF+VVGMDGG W+ SRN+YNLRDAVARCT QVYP
Sbjct: 415 DYRTFVEIIFENSEDIVQSWHLDGYSFWVVGMDGGQWSPDSRNEYNLRDAVARCTVQVYP 474
Query: 500 YSWTAIYVALDNVGMWNLRTEFWARQYLGQQFYLRVYTASTSIRDEFPVPKNALLCGRAS 321
SWTAI +ALDNVGMWNLR+EFWARQYLGQQ YLRVYT STS+RDE+P+PKNALLCGRAS
Sbjct: 475 SSWTAILIALDNVGMWNLRSEFWARQYLGQQLYLRVYTPSTSLRDEYPIPKNALLCGRAS 534
Query: 320 GRHKRPL 300
GR RPL
Sbjct: 535 GRSTRPL 541
>ref|NP_177743.1| pectinesterase (pectin methylesterase), putative; protein id:
At1g76160.1, supported by cDNA: gi_15982770 [Arabidopsis
thaliana] gi|25285549|pir||E96789 protein T23E18.10
[imported] - Arabidopsis thaliana
gi|6573725|gb|AAF17645.1|AC009978_21 T23E18.10
[Arabidopsis thaliana]
Length = 541
Score = 226 bits (576), Expect = 2e-58
Identities = 102/127 (80%), Positives = 117/127 (91%)
Frame = -3
Query: 680 DFRSFVEIVFQNNENIVQSYHLDGYSFFVVGMDGGTWTASSRNQYNLRDAVARCTTQVYP 501
D+R+FVEI+F+N+E+IVQS+HLDGYSF+VVGMDGG W+ SRN+YNLRDAVARCT QVYP
Sbjct: 415 DYRTFVEIIFENSEDIVQSWHLDGYSFWVVGMDGGQWSPDSRNEYNLRDAVARCTVQVYP 474
Query: 500 YSWTAIYVALDNVGMWNLRTEFWARQYLGQQFYLRVYTASTSIRDEFPVPKNALLCGRAS 321
SWTAI +ALDNVGMWNLR+EFWARQYLGQQ YLRVYT STS+RDE+P+PKNALLCGRAS
Sbjct: 475 SSWTAILIALDNVGMWNLRSEFWARQYLGQQLYLRVYTPSTSLRDEYPIPKNALLCGRAS 534
Query: 320 GRHKRPL 300
GR RPL
Sbjct: 535 GRSTRPL 541
>gb|AAM97070.1| pectinesterase, putative [Arabidopsis thaliana]
gi|23198038|gb|AAN15546.1| pectinesterase, putative
[Arabidopsis thaliana]
Length = 541
Score = 225 bits (574), Expect = 4e-58
Identities = 102/127 (80%), Positives = 116/127 (91%)
Frame = -3
Query: 680 DFRSFVEIVFQNNENIVQSYHLDGYSFFVVGMDGGTWTASSRNQYNLRDAVARCTTQVYP 501
D+R+FVEI+F+N+E+IVQS+HLDGYSF+VVGMDGG W+ SRN+YNLRDAVARCT QVYP
Sbjct: 415 DYRTFVEIIFENSEDIVQSWHLDGYSFWVVGMDGGQWSPDSRNEYNLRDAVARCTVQVYP 474
Query: 500 YSWTAIYVALDNVGMWNLRTEFWARQYLGQQFYLRVYTASTSIRDEFPVPKNALLCGRAS 321
SWTAI +ALDNVGMWNLR EFWARQYLGQQ YLRVYT STS+RDE+P+PKNALLCGRAS
Sbjct: 475 SSWTAILIALDNVGMWNLRPEFWARQYLGQQLYLRVYTPSTSLRDEYPIPKNALLCGRAS 534
Query: 320 GRHKRPL 300
GR RPL
Sbjct: 535 GRSTRPL 541
>emb|CAA65634.1| PS60 [Nicotiana tabacum]
Length = 540
Score = 221 bits (564), Expect = 5e-57
Identities = 99/127 (77%), Positives = 115/127 (89%)
Frame = -3
Query: 680 DFRSFVEIVFQNNENIVQSYHLDGYSFFVVGMDGGTWTASSRNQYNLRDAVARCTTQVYP 501
D+R F+EIVF+N E+IVQS+HL+GYSF+VVGMDGG WT +SRN YNLRDAVAR TTQVYP
Sbjct: 414 DYRQFIEIVFENTEDIVQSWHLNGYSFWVVGMDGGHWTQASRNGYNLRDAVARYTTQVYP 473
Query: 500 YSWTAIYVALDNVGMWNLRTEFWARQYLGQQFYLRVYTASTSIRDEFPVPKNALLCGRAS 321
SWTAIY+ALDNVGMWNLRTEFWARQYLGQQ Y+RVYT STS+RDE+P+P+NA LCG+ +
Sbjct: 474 KSWTAIYIALDNVGMWNLRTEFWARQYLGQQLYMRVYTTSTSLRDEYPIPRNARLCGKVA 533
Query: 320 GRHKRPL 300
GRH RPL
Sbjct: 534 GRHTRPL 540
>ref|NP_564479.1| pectinesterase (pectin methylesterase), putative; protein id:
At1g41830.1, supported by cDNA: gi_16648888 [Arabidopsis
thaliana]
Length = 542
Score = 219 bits (558), Expect = 3e-56
Identities = 98/127 (77%), Positives = 114/127 (89%)
Frame = -3
Query: 680 DFRSFVEIVFQNNENIVQSYHLDGYSFFVVGMDGGTWTASSRNQYNLRDAVARCTTQVYP 501
D+R+F+EIVF+N E+IVQSYHL+GYSF+VVGMDGG W SRN YNLRDAV+R T QVYP
Sbjct: 416 DYRTFIEIVFENQEDIVQSYHLNGYSFWVVGMDGGQWKTGSRNGYNLRDAVSRSTVQVYP 475
Query: 500 YSWTAIYVALDNVGMWNLRTEFWARQYLGQQFYLRVYTASTSIRDEFPVPKNALLCGRAS 321
SWTAIY+ALDNVGMWNLR+EFWARQYLGQQ YLRV+T+STS+RDE+P+PKN+ LCGRA
Sbjct: 476 KSWTAIYIALDNVGMWNLRSEFWARQYLGQQLYLRVFTSSTSLRDEYPIPKNSRLCGRAR 535
Query: 320 GRHKRPL 300
GRH RPL
Sbjct: 536 GRHTRPL 542
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 568,151,464
Number of Sequences: 1393205
Number of extensions: 12104677
Number of successful extensions: 44420
Number of sequences better than 10.0: 152
Number of HSP's better than 10.0 without gapping: 37625
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43386
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 30270070164
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
