Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005484A_C01 KMC005484A_c01
(548 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAN08648.1| putative tRNA synthetase [Oryza sativa (japonica ... 124 7e-28
gb|AAM08833.1|AC113335_13 Putative glutamyl-tRNA synthetase [Ory... 124 7e-28
dbj|BAA90375.1| unnamed protein product [Oryza sativa (japonica ... 119 3e-26
ref|NP_198023.1| glutamyl-tRNA synthetase; protein id: At5g26707... 111 5e-24
pir||T01200 probable glutamate-tRNA ligase (EC 6.1.1.17) F21E10.... 111 5e-24
>gb|AAN08648.1| putative tRNA synthetase [Oryza sativa (japonica cultivar-group)]
Length = 429
Score = 124 bits (311), Expect = 7e-28
Identities = 56/74 (75%), Positives = 66/74 (88%)
Frame = -2
Query: 547 KKKLEENEEFTDVLNPCTKKETLAYGDSNMRNLKQGEILQLERKGYFRCDAPFIRPSKPI 368
KKKLEE+E F D LNPCT+KETLA GD+NMRNL +GE++QLERKGY+RCDAPF+R SKP+
Sbjct: 355 KKKLEEDENFLDNLNPCTRKETLALGDANMRNLLRGEVIQLERKGYYRCDAPFVRSSKPV 414
Query: 367 VLYAIPDGRQQTCL 326
VL+AIPDGRQQ L
Sbjct: 415 VLFAIPDGRQQASL 428
>gb|AAM08833.1|AC113335_13 Putative glutamyl-tRNA synthetase [Oryza sativa (japonica
cultivar-group)]
Length = 713
Score = 124 bits (311), Expect = 7e-28
Identities = 56/74 (75%), Positives = 66/74 (88%)
Frame = -2
Query: 547 KKKLEENEEFTDVLNPCTKKETLAYGDSNMRNLKQGEILQLERKGYFRCDAPFIRPSKPI 368
KKKLEE+E F D LNPCT+KETLA GD+NMRNL +GE++QLERKGY+RCDAPF+R SKP+
Sbjct: 639 KKKLEEDENFLDNLNPCTRKETLALGDANMRNLLRGEVIQLERKGYYRCDAPFVRSSKPV 698
Query: 367 VLYAIPDGRQQTCL 326
VL+AIPDGRQQ L
Sbjct: 699 VLFAIPDGRQQASL 712
>dbj|BAA90375.1| unnamed protein product [Oryza sativa (japonica cultivar-group)]
Length = 715
Score = 119 bits (297), Expect = 3e-26
Identities = 56/75 (74%), Positives = 65/75 (86%)
Frame = -2
Query: 547 KKKLEENEEFTDVLNPCTKKETLAYGDSNMRNLKQGEILQLERKGYFRCDAPFIRPSKPI 368
KKKLEE++ F D LNPCT +E A GD+NMRNLKQGEI+QLERKGY+RCDAPFIR SKPI
Sbjct: 641 KKKLEEDDNFLDNLNPCTCQEFPALGDANMRNLKQGEIIQLERKGYYRCDAPFIRSSKPI 700
Query: 367 VLYAIPDGRQQTCLK 323
VL+AIPDGRQ++ K
Sbjct: 701 VLFAIPDGRQKSATK 715
>ref|NP_198023.1| glutamyl-tRNA synthetase; protein id: At5g26707.1, supported by
cDNA: gi_20466251, supported by cDNA: gi_3435195
[Arabidopsis thaliana] gi|25293270|pir||T52043 probable
glutamate-tRNA ligase (EC 6.1.1.17) [imported] -
Arabidopsis thaliana gi|3435196|gb|AAC36469.1|
glutamyl-tRNA synthetase [Arabidopsis thaliana]
gi|20466252|gb|AAM20443.1| glutamyl-tRNA synthetase
[Arabidopsis thaliana] gi|23198080|gb|AAN15567.1|
glutamyl-tRNA synthetase [Arabidopsis thaliana]
Length = 719
Score = 111 bits (278), Expect = 5e-24
Identities = 50/69 (72%), Positives = 61/69 (87%)
Frame = -2
Query: 547 KKKLEENEEFTDVLNPCTKKETLAYGDSNMRNLKQGEILQLERKGYFRCDAPFIRPSKPI 368
KKKLE+++E D +NP TKKETLA GDSNMRNLK G+++QLERKGYFRCD PF++ SKPI
Sbjct: 648 KKKLEDDDEVADFVNPNTKKETLALGDSNMRNLKCGDVIQLERKGYFRCDVPFVKSSKPI 707
Query: 367 VLYAIPDGR 341
VL++IPDGR
Sbjct: 708 VLFSIPDGR 716
>pir||T01200 probable glutamate-tRNA ligase (EC 6.1.1.17) F21E10.12 -
Arabidopsis thaliana gi|3047084|gb|AAC13597.1| similar
to aminoacyl-tRNA synthetases [Arabidopsis thaliana]
Length = 728
Score = 111 bits (278), Expect = 5e-24
Identities = 50/69 (72%), Positives = 61/69 (87%)
Frame = -2
Query: 547 KKKLEENEEFTDVLNPCTKKETLAYGDSNMRNLKQGEILQLERKGYFRCDAPFIRPSKPI 368
KKKLE+++E D +NP TKKETLA GDSNMRNLK G+++QLERKGYFRCD PF++ SKPI
Sbjct: 657 KKKLEDDDEVADFVNPNTKKETLALGDSNMRNLKCGDVIQLERKGYFRCDVPFVKSSKPI 716
Query: 367 VLYAIPDGR 341
VL++IPDGR
Sbjct: 717 VLFSIPDGR 725
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 434,612,979
Number of Sequences: 1393205
Number of extensions: 8975795
Number of successful extensions: 20411
Number of sequences better than 10.0: 54
Number of HSP's better than 10.0 without gapping: 19659
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20402
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 18947112822
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
