Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005482A_C01 KMC005482A_c01
(609 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_181540.1| unknown protein; protein id: At2g40110.1, suppo... 47 3e-04
gb|AAO38447.1| putative zinc binding protein [Oryza sativa (japo... 46 4e-04
sp|P59234|YIPL_SOLTU Yippee-like protein gi|24745964|dbj|BAC2305... 44 0.001
ref|NP_566389.1| expressed protein; protein id: At3g11230.1, sup... 43 0.004
gb|AAM67003.1| yippee-like protein [Arabidopsis thaliana] 43 0.004
>ref|NP_181540.1| unknown protein; protein id: At2g40110.1, supported by cDNA: 16208.
[Arabidopsis thaliana] gi|25367152|pir||D84825
hypothetical protein At2g40110 [imported] - Arabidopsis
thaliana gi|21553745|gb|AAM62838.1| Yippee-like protein
[Arabidopsis thaliana] gi|25054939|gb|AAN71946.1|
unknown protein [Arabidopsis thaliana]
Length = 130
Score = 46.6 bits (109), Expect = 3e-04
Identities = 21/32 (65%), Positives = 26/32 (80%), Gaps = 1/32 (3%)
Frame = -3
Query: 427 MLLRYKMSSPDGRNYWI-SHEANIGGSDADDA 335
+L R+K+S PDG NYW+ SH +IGGSDADDA
Sbjct: 99 VLERFKISGPDGSNYWVSSHGRHIGGSDADDA 130
>gb|AAO38447.1| putative zinc binding protein [Oryza sativa (japonica
cultivar-group)]
Length = 129
Score = 45.8 bits (107), Expect = 4e-04
Identities = 17/30 (56%), Positives = 26/30 (86%)
Frame = -3
Query: 427 MLLRYKMSSPDGRNYWISHEANIGGSDADD 338
+L RYK+S PDG +Y+++H+A++GGSD DD
Sbjct: 99 ILERYKVSGPDGSHYFVTHDAHVGGSDVDD 128
>sp|P59234|YIPL_SOLTU Yippee-like protein gi|24745964|dbj|BAC23053.1| yippee-like protein
[Solanum tuberosum]
Length = 129
Score = 44.3 bits (103), Expect = 0.001
Identities = 16/30 (53%), Positives = 24/30 (79%)
Frame = -3
Query: 427 MLLRYKMSSPDGRNYWISHEANIGGSDADD 338
+L R+K++ PDG +YW SH+ ++ GSDADD
Sbjct: 99 VLERFKITGPDGSHYWASHDTHVAGSDADD 128
>ref|NP_566389.1| expressed protein; protein id: At3g11230.1, supported by cDNA:
9180. [Arabidopsis thaliana]
gi|27923897|sp|Q9C777|YPL3_ARATH Yippee-like protein
At3g11230 gi|12321870|gb|AAG50966.1|AC073395_8 unknown
protein; 53948-55359 [Arabidopsis thaliana]
Length = 129
Score = 42.7 bits (99), Expect = 0.004
Identities = 17/31 (54%), Positives = 21/31 (66%)
Frame = -3
Query: 427 MLLRYKMSSPDGRNYWISHEANIGGSDADDA 335
+L RYK+ PDG NYW++ E G SD DDA
Sbjct: 99 VLERYKVWGPDGNNYWVAQEVEAGDSDTDDA 129
>gb|AAM67003.1| yippee-like protein [Arabidopsis thaliana]
Length = 129
Score = 42.7 bits (99), Expect = 0.004
Identities = 17/31 (54%), Positives = 21/31 (66%)
Frame = -3
Query: 427 MLLRYKMSSPDGRNYWISHEANIGGSDADDA 335
+L RYK+ PDG NYW++ E G SD DDA
Sbjct: 99 VLERYKVWGPDGNNYWVAQEVEAGDSDTDDA 129
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 512,415,755
Number of Sequences: 1393205
Number of extensions: 10665128
Number of successful extensions: 23007
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 21945
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22937
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 24283162270
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
