Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005480A_C01 KMC005480A_c01
(646 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T51176 actin [imported] - mung bean gi|6934188|gb|AAF31643.... 222 3e-57
sp|P46258|ACT3_PEA ACTIN 3 gi|2119318|pir||S58316 actin - garden... 221 8e-57
gb|AAC60565.1| actin [Striga asiatica] 220 1e-56
pir||T51178 actin ACT2 [imported] - Striga asiatica gi|1531674|g... 220 1e-56
ref|NP_196543.1| ACTIN 2/7 (sp|P53492); protein id: At5g09810.1,... 220 1e-56
>pir||T51176 actin [imported] - mung bean gi|6934188|gb|AAF31643.1|AF143208_1
actin [Vigna radiata]
Length = 377
Score = 222 bits (566), Expect = 3e-57
Identities = 108/111 (97%), Positives = 111/111 (99%)
Frame = -1
Query: 646 SMIGMEAPGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSS 467
SMIGME+PGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEI+ALAPSS
Sbjct: 267 SMIGMESPGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSS 326
Query: 466 MKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDEAGPSIVHRKCF 314
MKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDE+GPSIVHRKCF
Sbjct: 327 MKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377
>sp|P46258|ACT3_PEA ACTIN 3 gi|2119318|pir||S58316 actin - garden pea
gi|940813|emb|CAA62028.1| actin [Pisum sativum]
Length = 377
Score = 221 bits (562), Expect = 8e-57
Identities = 107/111 (96%), Positives = 111/111 (99%)
Frame = -1
Query: 646 SMIGMEAPGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSS 467
SMIGME+PGIHETT+NSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEI+ALAPSS
Sbjct: 267 SMIGMESPGIHETTFNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSS 326
Query: 466 MKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDEAGPSIVHRKCF 314
MKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDE+GPSIVHRKCF
Sbjct: 327 MKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377
>gb|AAC60565.1| actin [Striga asiatica]
Length = 114
Score = 220 bits (561), Expect = 1e-56
Identities = 108/111 (97%), Positives = 110/111 (98%)
Frame = -1
Query: 646 SMIGMEAPGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSS 467
SMIGMEA GIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEI+ALAPSS
Sbjct: 4 SMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSS 63
Query: 466 MKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDEAGPSIVHRKCF 314
MKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDE+GPSIVHRKCF
Sbjct: 64 MKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 114
>pir||T51178 actin ACT2 [imported] - Striga asiatica gi|1531674|gb|AAC49652.1|
actin [Striga asiatica]
Length = 377
Score = 220 bits (561), Expect = 1e-56
Identities = 108/111 (97%), Positives = 110/111 (98%)
Frame = -1
Query: 646 SMIGMEAPGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSS 467
SMIGMEA GIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEI+ALAPSS
Sbjct: 267 SMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSS 326
Query: 466 MKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDEAGPSIVHRKCF 314
MKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDE+GPSIVHRKCF
Sbjct: 327 MKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377
>ref|NP_196543.1| ACTIN 2/7 (sp|P53492); protein id: At5g09810.1, supported by cDNA:
gi_1049306, supported by cDNA: gi_17065251, supported by
cDNA: gi_17381047, supported by cDNA: gi_20465864
[Arabidopsis thaliana] gi|1703108|sp|P53492|ACT7_ARATH
Actin 7 (Actin 2) gi|2129528|pir||S68107 actin 7 -
Arabidopsis thaliana gi|1049307|gb|AAA80356.1| actin-2
gi|1943863|gb|AAB52506.1| actin7
gi|9758959|dbj|BAB09402.1| ACTIN 2/7 [Arabidopsis
thaliana] gi|17065252|gb|AAL32780.1| ACTIN 2/7
[Arabidopsis thaliana] gi|17381048|gb|AAL36336.1|
putative ACTIN 2/7 protein [Arabidopsis thaliana]
gi|20465865|gb|AAM20037.1| putative actin 2/7 protein
[Arabidopsis thaliana] gi|21387189|gb|AAM47998.1| ACTIN
2/7 [Arabidopsis thaliana] gi|21539569|gb|AAM53337.1|
actin 2/7 [Arabidopsis thaliana]
Length = 377
Score = 220 bits (560), Expect = 1e-56
Identities = 106/111 (95%), Positives = 111/111 (99%)
Frame = -1
Query: 646 SMIGMEAPGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSS 467
S+IGMEAPGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEI+ALAPSS
Sbjct: 267 SLIGMEAPGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSS 326
Query: 466 MKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDEAGPSIVHRKCF 314
MKIKVVAPPERKYSVWIGGSILASLSTFQQMWI+K+EYDE+GPSIVHRKCF
Sbjct: 327 MKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKSEYDESGPSIVHRKCF 377
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 564,702,641
Number of Sequences: 1393205
Number of extensions: 11977904
Number of successful extensions: 32224
Number of sequences better than 10.0: 1347
Number of HSP's better than 10.0 without gapping: 30949
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32030
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 27291941472
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
