Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005479A_C01 KMC005479A_c01
(629 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAK16179.1|AC079887_11 hypothetical protein [Oryza sativa] 71 1e-11
ref|NP_172847.1| hypothetical protein; protein id: At1g13940.1 [... 67 2e-10
ref|NP_564962.1| expressed protein; protein id: At1g69360.1, sup... 54 1e-06
gb|AAG52500.1|AC018364_18 unknown protein; 21446-24388 [Arabidop... 54 1e-06
ref|NP_173984.1| hypothetical protein; protein id: At1g26620.1 [... 54 2e-06
>gb|AAK16179.1|AC079887_11 hypothetical protein [Oryza sativa]
Length = 1029
Score = 70.9 bits (172), Expect = 1e-11
Identities = 38/119 (31%), Positives = 68/119 (56%)
Frame = +2
Query: 200 LMALLDANVPCNDYFPGHYSTKDVTLDPEGSTWTSSNVNIELRNDRHQMGSFPVSSPCTP 379
++A + A V ++Y G+Y+ D +D G W S + E ++ H F
Sbjct: 36 ILARMGAKVEGDNYMLGYYAMGDFNMDANGR-W--SPYHDEKMSNGHMCNGFMTKPANGY 92
Query: 380 LDYNKELLKQTILNQEAIFKHQIHELHRVYHKQRELMDEVKRNEVYKHNLRLEAPRSSS 556
+Y+KE+L +T+L EAIF+ Q++ELHRVY QR+LM + + ++Y + + +A +++S
Sbjct: 93 SEYDKEMLTRTMLEHEAIFRQQVYELHRVYKIQRDLMKQYQNKDIYAYPMLEDASKTNS 151
>ref|NP_172847.1| hypothetical protein; protein id: At1g13940.1 [Arabidopsis
thaliana] gi|8778405|gb|AAF79413.1|AC068197_23 F16A14.15
[Arabidopsis thaliana]
Length = 1005
Score = 67.0 bits (162), Expect = 2e-10
Identities = 43/137 (31%), Positives = 71/137 (51%), Gaps = 5/137 (3%)
Frame = +2
Query: 212 LDANVPCNDYFPG-HYSTKDVTLDPE-GSTWT---SSNVNIELRNDRHQMGSFPVSSPCT 376
+ V C F G H+S D+ + G W N ND+ F T
Sbjct: 1 MGTKVHCESLFGGYHHSMGDLNKESNNGCRWPLFYGDNKTSASNNDQCYNNGFTSQ---T 57
Query: 377 PLDYNKELLKQTILNQEAIFKHQIHELHRVYHKQRELMDEVKRNEVYKHNLRLEAPRSSS 556
++K+++++T+L EA+FK Q+ ELHRVY Q+++MDE+KR + K +++EA SS
Sbjct: 58 TFGFDKDVVRRTMLEHEAVFKTQVLELHRVYRTQKDMMDELKRKQFNKEWVQIEASLSSQ 117
Query: 557 ALSSENTQKMFCLPSLP 607
A + + + + +PS P
Sbjct: 118 ATNDD--VRKWKIPSFP 132
>ref|NP_564962.1| expressed protein; protein id: At1g69360.1, supported by cDNA:
gi_16604686 [Arabidopsis thaliana]
Length = 896
Score = 54.3 bits (129), Expect = 1e-06
Identities = 23/46 (50%), Positives = 32/46 (69%)
Frame = +2
Query: 386 YNKELLKQTILNQEAIFKHQIHELHRVYHKQRELMDEVKRNEVYKH 523
Y ++ LKQT+L EA+FK+Q++ELHR+Y Q+ LM EVK H
Sbjct: 55 YERDFLKQTMLEHEAVFKNQVYELHRLYRTQKSLMAEVKGKNFVDH 100
>gb|AAG52500.1|AC018364_18 unknown protein; 21446-24388 [Arabidopsis thaliana]
gi|12597788|gb|AAG60100.1|AC073178_11 unknown protein
[Arabidopsis thaliana]
Length = 910
Score = 54.3 bits (129), Expect = 1e-06
Identities = 23/46 (50%), Positives = 32/46 (69%)
Frame = +2
Query: 386 YNKELLKQTILNQEAIFKHQIHELHRVYHKQRELMDEVKRNEVYKH 523
Y ++ LKQT+L EA+FK+Q++ELHR+Y Q+ LM EVK H
Sbjct: 69 YERDFLKQTMLEHEAVFKNQVYELHRLYRTQKSLMAEVKGKNFVDH 114
>ref|NP_173984.1| hypothetical protein; protein id: At1g26620.1 [Arabidopsis
thaliana] gi|25372917|pir||D86393 hypothetical protein
T1K7.1 - Arabidopsis thaliana
gi|9797740|gb|AAF98558.1|AC013427_1 Contains similarity
to a hypothetical protein F23O10.6 gi|7705087 from
Arabidopsis thaliana BAC F23O10 gb|AC018364
Length = 867
Score = 53.9 bits (128), Expect = 2e-06
Identities = 30/76 (39%), Positives = 43/76 (56%), Gaps = 4/76 (5%)
Frame = +2
Query: 386 YNKELLKQTILNQEAIFKHQIHELHRVYHKQRELMDEVKRNEVYKHNLRLEAPRSSSALS 565
Y K+ +K T+L EA+FK+Q+HELHR+Y Q+ L++EVK + E S +
Sbjct: 13 YEKDFMKHTMLEHEAVFKNQVHELHRLYRVQKNLVEEVKGKNLN------EVMNVSDHHT 66
Query: 566 SENTQKM----FCLPS 601
SEN K F LP+
Sbjct: 67 SENESKRKLHGFLLPN 82
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 551,705,433
Number of Sequences: 1393205
Number of extensions: 12031796
Number of successful extensions: 34922
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 33209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34799
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 25870486187
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
