Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005478A_C01 KMC005478A_c01
(682 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_193943.1| putative protein; protein id: At4g22120.1 [Arab... 176 2e-43
ref|NP_192343.1| unknown protein; protein id: At4g04340.1, suppo... 172 3e-42
dbj|BAB89160.1| OJ1029_F04.25 [Oryza sativa (japonica cultivar-g... 172 3e-42
gb|AAL07154.1| unknown protein [Arabidopsis thaliana] 171 1e-41
pir||T01441 hypothetical protein F24O1.3 - Arabidopsis thaliana 159 3e-38
>ref|NP_193943.1| putative protein; protein id: At4g22120.1 [Arabidopsis thaliana]
gi|11357340|pir||T49119 hypothetical protein AT4g22120 -
Arabidopsis thaliana gi|2961357|emb|CAA18115.1| putative
protein [Arabidopsis thaliana]
gi|7269057|emb|CAB79167.1| putative protein [Arabidopsis
thaliana]
Length = 697
Score = 176 bits (447), Expect = 2e-43
Identities = 90/125 (72%), Positives = 101/125 (80%), Gaps = 1/125 (0%)
Frame = -1
Query: 682 RIIFALVISQLLLMGLLSTKEAANSTPLLIILPVLTIWFHLFCKGRYEPAFVQHPLQEAM 503
R+I ALVISQLLLMGLL TK AA + P LI LPVLTI FH FCKGRYEPAF+++PLQEAM
Sbjct: 556 RVIAALVISQLLLMGLLGTKHAALAAPFLIALPVLTIGFHHFCKGRYEPAFIRYPLQEAM 615
Query: 502 MKDTLERAREPQLNYKEFLQNAYIHPVFKSDEDS-DSDVMSQEFEDEPMLVQTKRQSRKN 326
MKDTLE AREP LN K +LQNAY+HPVFK DED D D +FEDE ++V TKRQSR+N
Sbjct: 616 MKDTLETAREPNLNLKGYLQNAYVHPVFKGDEDDYDIDDKLGKFEDEAIIVPTKRQSRRN 675
Query: 325 TPLPS 311
TP PS
Sbjct: 676 TPAPS 680
>ref|NP_192343.1| unknown protein; protein id: At4g04340.1, supported by cDNA:
gi_15810532, supported by cDNA: gi_20260619 [Arabidopsis
thaliana] gi|25407261|pir||H85054 hypothetical protein
AT4g04340 [imported] - Arabidopsis thaliana
gi|4982479|gb|AAD36947.1|AF069441_7 predicted protein of
unknown function [Arabidopsis thaliana]
gi|7267191|emb|CAB77902.1| predicted protein of unknown
function [Arabidopsis thaliana]
gi|20260620|gb|AAM13208.1| unknown protein [Arabidopsis
thaliana]
Length = 772
Score = 172 bits (437), Expect = 3e-42
Identities = 85/127 (66%), Positives = 103/127 (80%)
Frame = -1
Query: 682 RIIFALVISQLLLMGLLSTKEAANSTPLLIILPVLTIWFHLFCKGRYEPAFVQHPLQEAM 503
R+I AL+ISQLLLMGLL TK AA++ P LI LPV+TI FH FCKGR+EPAFV++PLQEAM
Sbjct: 631 RVITALIISQLLLMGLLGTKHAASAAPFLIALPVITIGFHRFCKGRFEPAFVRYPLQEAM 690
Query: 502 MKDTLERAREPQLNYKEFLQNAYIHPVFKSDEDSDSDVMSQEFEDEPMLVQTKRQSRKNT 323
MKDTLERAREP LN K +LQ+AYIHPVFK ++ D M + E+E ++V TKRQSR+NT
Sbjct: 691 MKDTLERAREPNLNLKGYLQDAYIHPVFKGGDNDDDGDMIGKLENEVIIVPTKRQSRRNT 750
Query: 322 PLPSKHS 302
P PS+ S
Sbjct: 751 PAPSRIS 757
>dbj|BAB89160.1| OJ1029_F04.25 [Oryza sativa (japonica cultivar-group)]
Length = 646
Score = 172 bits (437), Expect = 3e-42
Identities = 83/129 (64%), Positives = 105/129 (81%)
Frame = -1
Query: 682 RIIFALVISQLLLMGLLSTKEAANSTPLLIILPVLTIWFHLFCKGRYEPAFVQHPLQEAM 503
RII AL++SQLLL+GLLSTK A STP+L++LPV+T +F+ +CK RYEPAFV++PLQ+AM
Sbjct: 504 RIIVALIVSQLLLLGLLSTKGAGQSTPVLLVLPVVTFYFYKYCKNRYEPAFVEYPLQDAM 563
Query: 502 MKDTLERAREPQLNYKEFLQNAYIHPVFKSDEDSDSDVMSQEFEDEPMLVQTKRQSRKNT 323
KDTLERAREP + K +L NAYIHPVFK DED + +S E E E +LV TKRQSR+NT
Sbjct: 564 RKDTLERAREPGFDLKGYLMNAYIHPVFKGDEDDEKFSISDEPEAEQVLVATKRQSRRNT 623
Query: 322 PLPSKHSSS 296
P+PSK++ S
Sbjct: 624 PVPSKYNGS 632
>gb|AAL07154.1| unknown protein [Arabidopsis thaliana]
Length = 772
Score = 171 bits (432), Expect = 1e-41
Identities = 84/127 (66%), Positives = 102/127 (80%)
Frame = -1
Query: 682 RIIFALVISQLLLMGLLSTKEAANSTPLLIILPVLTIWFHLFCKGRYEPAFVQHPLQEAM 503
R+I AL+ISQLLLMGLL TK AA++ P LI LPV+T FH FCKGR+EPAFV++PLQEAM
Sbjct: 631 RVITALIISQLLLMGLLGTKHAASAAPFLIALPVITTGFHRFCKGRFEPAFVRYPLQEAM 690
Query: 502 MKDTLERAREPQLNYKEFLQNAYIHPVFKSDEDSDSDVMSQEFEDEPMLVQTKRQSRKNT 323
MKDTLERAREP LN K +LQ+AYIHPVFK ++ D M + E+E ++V TKRQSR+NT
Sbjct: 691 MKDTLERAREPNLNLKGYLQDAYIHPVFKGGDNDDDGDMIGKLENEVIIVPTKRQSRRNT 750
Query: 322 PLPSKHS 302
P PS+ S
Sbjct: 751 PAPSRIS 757
>pir||T01441 hypothetical protein F24O1.3 - Arabidopsis thaliana
Length = 760
Score = 159 bits (402), Expect = 3e-38
Identities = 79/129 (61%), Positives = 101/129 (78%), Gaps = 1/129 (0%)
Frame = -1
Query: 682 RIIFALVISQLLLMGLLSTKEAANSTPLLIILPVLTIWFHLFCKGRYEPAFVQHPLQEAM 503
RII AL+ISQ+LL+GL+STK STP L++L +LT FH FCKGRYE AFV +PLQEAM
Sbjct: 611 RIISALIISQILLLGLMSTKGKVQSTPFLLVLAILTFGFHRFCKGRYESAFVINPLQEAM 670
Query: 502 MKDTLERAREPQLNYKEFLQNAYIHPVFKSDEDSDSDVMSQEFEDEP-MLVQTKRQSRKN 326
+KDTLERAREP LN K FLQNAY+HPVFK +EDSD + + ++ +DE ++VQTKRQ +
Sbjct: 671 IKDTLERAREPNLNLKGFLQNAYVHPVFKDEEDSDEEGLIEDSDDEDCVVVQTKRQRSRR 730
Query: 325 TPLPSKHSS 299
T + S ++S
Sbjct: 731 TTVASSNAS 739
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 530,075,135
Number of Sequences: 1393205
Number of extensions: 10818156
Number of successful extensions: 29517
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 28418
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29474
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 30270070164
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
