Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005477A_C03 KMC005477A_c03
(781 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||G86186 hypothetical protein [imported] - Arabidopsis thalia... 59 6e-08
ref|NP_172015.1| homeodomain protein; protein id: At1g05230.1, s... 59 6e-08
pir||S71477 homeotic protein, ovule-specific - Phalaenopsis sp g... 59 1e-07
gb|AAL73523.1|AF466200_2 OCL5 protein [Sorghum bicolor] 55 9e-07
pir||E85061 probable homeotic protein [imported] - Arabidopsis t... 55 1e-06
>pir||G86186 hypothetical protein [imported] - Arabidopsis thaliana
gi|2388574|gb|AAB71455.1| Strong similarity to
Phalaenopsis homeobox protein (gb|U34743). [Arabidopsis
thaliana]
Length = 749
Score = 59.3 bits (142), Expect = 6e-08
Identities = 30/34 (88%), Positives = 32/34 (93%)
Frame = -2
Query: 780 VPTAKLSLGSVATVNNLIACTVERIKAALSGEVA 679
VPTAKLSLGSVATVNNLIACTVERIKA++S E A
Sbjct: 716 VPTAKLSLGSVATVNNLIACTVERIKASMSCETA 749
>ref|NP_172015.1| homeodomain protein; protein id: At1g05230.1, supported by cDNA:
gi_14334995, supported by cDNA: gi_20147144 [Arabidopsis
thaliana] gi|14334996|gb|AAK59762.1|
At1g05230/YUP8H12_16 [Arabidopsis thaliana]
gi|20147145|gb|AAM10289.1| At1g05230/YUP8H12_16
[Arabidopsis thaliana]
Length = 721
Score = 59.3 bits (142), Expect = 6e-08
Identities = 30/34 (88%), Positives = 32/34 (93%)
Frame = -2
Query: 780 VPTAKLSLGSVATVNNLIACTVERIKAALSGEVA 679
VPTAKLSLGSVATVNNLIACTVERIKA++S E A
Sbjct: 688 VPTAKLSLGSVATVNNLIACTVERIKASMSCETA 721
>pir||S71477 homeotic protein, ovule-specific - Phalaenopsis sp
gi|1173622|gb|AAB37230.1| homeobox protein
Length = 768
Score = 58.5 bits (140), Expect = 1e-07
Identities = 28/32 (87%), Positives = 32/32 (99%)
Frame = -2
Query: 780 VPTAKLSLGSVATVNNLIACTVERIKAALSGE 685
+PTAKLSLGSVATVN+LIACTVERIKAA++GE
Sbjct: 734 IPTAKLSLGSVATVNSLIACTVERIKAAVTGE 765
>gb|AAL73523.1|AF466200_2 OCL5 protein [Sorghum bicolor]
Length = 803
Score = 55.5 bits (132), Expect = 9e-07
Identities = 27/32 (84%), Positives = 31/32 (96%)
Frame = -2
Query: 780 VPTAKLSLGSVATVNNLIACTVERIKAALSGE 685
VPTAKLSLGSVATVN+LIACTVERIKAA++ +
Sbjct: 762 VPTAKLSLGSVATVNSLIACTVERIKAAVAAD 793
>pir||E85061 probable homeotic protein [imported] - Arabidopsis thaliana
gi|7267248|emb|CAB81031.1| putative homeotic protein
[Arabidopsis thaliana]
Length = 738
Score = 55.1 bits (131), Expect = 1e-06
Identities = 28/33 (84%), Positives = 31/33 (93%)
Frame = -2
Query: 780 VPTAKLSLGSVATVNNLIACTVERIKAALSGEV 682
VPTAKLSLGSVATVN+LI CTVERIKAA+S +V
Sbjct: 702 VPTAKLSLGSVATVNSLIKCTVERIKAAVSCDV 734
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 604,983,455
Number of Sequences: 1393205
Number of extensions: 12354127
Number of successful extensions: 21693
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 21240
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21690
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 38655378996
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
