Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005476A_C01 KMC005476A_c01
(504 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAB65335.1| ferulate-5-hydroxylase [Populus balsamifera subs... 159 2e-38
emb|CAC26932.1| ferulate-5-hydroxylase [Arabidopsis thaliana] gi... 153 9e-37
emb|CAC26936.1| ferulate-5-hydroxylase [Arabidopsis thaliana] gi... 153 9e-37
ref|NP_195345.1| ferulate-5-hydroxylase (FAH1); protein id: At4g... 153 9e-37
gb|AAG14961.1|AF214007_1 cytochrome p450-dependent monooxygenase... 150 8e-36
>emb|CAB65335.1| ferulate-5-hydroxylase [Populus balsamifera subsp. trichocarpa]
Length = 513
Score = 159 bits (402), Expect = 2e-38
Identities = 72/80 (90%), Positives = 79/80 (98%)
Frame = -1
Query: 504 FKGSNFEFIPFGSGRRSCPGMQLGLYALDLAVAHLLHCFTWELPDGMKPSEMDMSDVFGL 325
FKG++FEFIPFGSGRRSCPGMQLGLYALDLAVAHLLHCFTWELPDGMKPSE+DM+D+FGL
Sbjct: 434 FKGNHFEFIPFGSGRRSCPGMQLGLYALDLAVAHLLHCFTWELPDGMKPSELDMTDMFGL 493
Query: 324 TAPRASRLVAIPTKRVVCPL 265
TAPRA+RLVA+P KRVVCPL
Sbjct: 494 TAPRATRLVAVPRKRVVCPL 513
>emb|CAC26932.1| ferulate-5-hydroxylase [Arabidopsis thaliana]
gi|12578895|emb|CAC26933.1| ferulate-5-hydroxylase
[Arabidopsis thaliana]
Length = 520
Score = 153 bits (387), Expect = 9e-37
Identities = 68/80 (85%), Positives = 77/80 (96%)
Frame = -1
Query: 504 FKGSNFEFIPFGSGRRSCPGMQLGLYALDLAVAHLLHCFTWELPDGMKPSEMDMSDVFGL 325
FKGSNFEFIPFGSGRRSCPGMQLGLYALDLAVAH+LHCFTW+LPDGMKPSE+DM+DVFGL
Sbjct: 441 FKGSNFEFIPFGSGRRSCPGMQLGLYALDLAVAHILHCFTWKLPDGMKPSELDMNDVFGL 500
Query: 324 TAPRASRLVAIPTKRVVCPL 265
TAP+A+RL A+PT R++C L
Sbjct: 501 TAPKATRLFAVPTTRLICAL 520
>emb|CAC26936.1| ferulate-5-hydroxylase [Arabidopsis thaliana]
gi|12578903|emb|CAC26937.1| ferulate-5-hydroxylase
[Arabidopsis thaliana] gi|12578905|emb|CAC26938.1|
ferulate-5-hydroxylase [Arabidopsis thaliana]
gi|12578907|emb|CAC26939.1| ferulate-5-hydroxylase
[Arabidopsis thaliana] gi|12578909|emb|CAC26940.1|
ferulate-5-hydroxylase [Arabidopsis thaliana]
gi|12578911|emb|CAC26941.1| ferulate-5-hydroxylase
[Arabidopsis thaliana]
Length = 520
Score = 153 bits (387), Expect = 9e-37
Identities = 68/80 (85%), Positives = 77/80 (96%)
Frame = -1
Query: 504 FKGSNFEFIPFGSGRRSCPGMQLGLYALDLAVAHLLHCFTWELPDGMKPSEMDMSDVFGL 325
FKGSNFEFIPFGSGRRSCPGMQLGLYALDLAVAH+LHCFTW+LPDGMKPSE+DM+DVFGL
Sbjct: 441 FKGSNFEFIPFGSGRRSCPGMQLGLYALDLAVAHILHCFTWKLPDGMKPSELDMNDVFGL 500
Query: 324 TAPRASRLVAIPTKRVVCPL 265
TAP+A+RL A+PT R++C L
Sbjct: 501 TAPKATRLFAVPTTRLICAL 520
>ref|NP_195345.1| ferulate-5-hydroxylase (FAH1); protein id: At4g36220.1, supported
by cDNA: gi_1488254 [Arabidopsis thaliana]
gi|5921932|sp|Q42600|C84A_ARATH Cytochrome P450 84A1
(Ferulate-5-hydroxylase) (F5H) gi|7430674|pir||T04591
ferulate-5-hydroxylase (EC 1.-.-.-) - Arabidopsis
thaliana gi|1488255|gb|AAC49389.1|
ferulate-5-hydroxylase gi|2961381|emb|CAA18128.1|
ferulate-5-hydroxylase (FAH1) [Arabidopsis thaliana]
gi|3925365|gb|AAD11580.1| ferulate-5-hydroxylase
[Arabidopsis thaliana] gi|7270575|emb|CAB80293.1|
ferulate-5-hydroxylase (FAH1) [Arabidopsis thaliana]
gi|12578873|emb|CAC26922.1| ferulate-5-hydroxylase
[Arabidopsis thaliana] gi|12578875|emb|CAC26923.1|
ferulate-5-hydroxylase [Arabidopsis thaliana]
gi|12578877|emb|CAC26924.1| ferulate-5-hydroxylase
[Arabidopsis thaliana] gi|12578879|emb|CAC26925.1|
ferulate-5-hydroxylase [Arabidopsis thaliana]
gi|12578881|emb|CAC26926.1| ferulate-5-hydroxylase
[Arabidopsis thaliana] gi|12578883|emb|CAC26927.1|
ferulate-5-hydroxylase [Arabidopsis thaliana]
gi|12578885|emb|CAC26928.1| ferulate-5-hydroxylase
[Arabidopsis thaliana] gi|12578887|emb|CAC26929.1|
ferulate-5-hydroxylase [Arabidopsis thaliana]
gi|12578889|emb|CAC26930.1| ferulate-5-hydroxylase
[Arabidopsis thaliana] gi|12578891|emb|CAC26931.1|
ferulate-5-hydroxylase [Arabidopsis thaliana]
gi|12578897|emb|CAC26934.1| ferulate-5-hydroxylase
[Arabidopsis thaliana] gi|12578899|emb|CAC26935.1|
ferulate-5-hydroxylase [Arabidopsis thaliana]
Length = 520
Score = 153 bits (387), Expect = 9e-37
Identities = 68/80 (85%), Positives = 77/80 (96%)
Frame = -1
Query: 504 FKGSNFEFIPFGSGRRSCPGMQLGLYALDLAVAHLLHCFTWELPDGMKPSEMDMSDVFGL 325
FKGSNFEFIPFGSGRRSCPGMQLGLYALDLAVAH+LHCFTW+LPDGMKPSE+DM+DVFGL
Sbjct: 441 FKGSNFEFIPFGSGRRSCPGMQLGLYALDLAVAHILHCFTWKLPDGMKPSELDMNDVFGL 500
Query: 324 TAPRASRLVAIPTKRVVCPL 265
TAP+A+RL A+PT R++C L
Sbjct: 501 TAPKATRLFAVPTTRLICAL 520
>gb|AAG14961.1|AF214007_1 cytochrome p450-dependent monooxygenase [Brassica napus]
Length = 520
Score = 150 bits (379), Expect = 8e-36
Identities = 66/78 (84%), Positives = 76/78 (96%)
Frame = -1
Query: 504 FKGSNFEFIPFGSGRRSCPGMQLGLYALDLAVAHLLHCFTWELPDGMKPSEMDMSDVFGL 325
FKGSNFEFIPFGSGRRSCPGMQLGLYAL+LAVAH+LHCFTW+LPDGMKPSE+DMSDVFGL
Sbjct: 441 FKGSNFEFIPFGSGRRSCPGMQLGLYALELAVAHILHCFTWKLPDGMKPSELDMSDVFGL 500
Query: 324 TAPRASRLVAIPTKRVVC 271
TAP+A+RL A+P+ R++C
Sbjct: 501 TAPKATRLYAVPSTRLIC 518
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 482,544,010
Number of Sequences: 1393205
Number of extensions: 11368336
Number of successful extensions: 39719
Number of sequences better than 10.0: 1352
Number of HSP's better than 10.0 without gapping: 36579
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39376
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15362785481
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
