Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005475A_C01 KMC005475A_c01
(595 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
prf||1211235DD NADH dehydrogenase 2-like ORF 180 97 2e-19
ref|NP_509972.1| Predicted CDS, putative nuclear protein, nemato... 32 4.7
>prf||1211235DD NADH dehydrogenase 2-like ORF 180
Length = 180
Score = 97.1 bits (240), Expect = 2e-19
Identities = 44/47 (93%), Positives = 44/47 (93%)
Frame = -1
Query: 595 TPDVYEGVRFVREIPTSLSISEMFGFFKTPWTCRREMLFPFGPRHNF 455
TPDVYEGVRFVREIPTSLSISEMFGFFKTPWTCRREML P GPR NF
Sbjct: 130 TPDVYEGVRFVREIPTSLSISEMFGFFKTPWTCRREMLSPLGPRQNF 176
>ref|NP_509972.1| Predicted CDS, putative nuclear protein, nematode specific
[Caenorhabditis elegans] gi|7509241|pir||T26376
hypothetical protein Y102F5A.1 - Caenorhabditis elegans
gi|3880667|emb|CAA21557.1| Hypothetical protein
Y102F5A.1 [Caenorhabditis elegans]
Length = 399
Score = 32.3 bits (72), Expect = 4.7
Identities = 20/59 (33%), Positives = 27/59 (44%)
Frame = -2
Query: 357 FLQRIGLMTYTILEFSI*MLHNWFLSFRDYEYNRSIRRQKDHPKMIISCLLRTNQIRWF 181
+L RI M E I HN+F ++ D+ I +DH K C L T+ I WF
Sbjct: 38 YLYRIFYMAPNDQEVQIFEWHNFFDTYHDFPMRVHIDNTEDHKK----CALMTDIIEWF 92
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 465,043,797
Number of Sequences: 1393205
Number of extensions: 9266595
Number of successful extensions: 18036
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 17729
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18036
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22854740960
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
