Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005471A_C02 KMC005471A_c02
(793 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_173226.2| ABC transporter family protein; protein id: At1... 160 2e-38
pir||E86313 hypothetical protein F2H15.7 - Arabidopsis thaliana ... 160 2e-38
gb|AAM92819.1| putative ABC transporter [Oryza sativa (japonica ... 128 1e-28
dbj|BAC22376.1| putative ABC transporter family protein [Oryza s... 64 3e-09
ref|NP_175561.1| ABC transporter family protein; protein id: At1... 60 3e-08
>ref|NP_173226.2| ABC transporter family protein; protein id: At1g17840.1
[Arabidopsis thaliana] gi|19423992|gb|AAL87274.1|
putative ABC transporter protein [Arabidopsis thaliana]
gi|23297574|gb|AAN12898.1| putative ABC transporter
protein [Arabidopsis thaliana]
Length = 703
Score = 160 bits (406), Expect = 2e-38
Identities = 76/91 (83%), Positives = 86/91 (93%)
Frame = -3
Query: 767 KIPGEYILENVFQIDVSRSKWVNLSVILSMIVIYRIIFFIMIKINEDVTPWVRGYMARRR 588
KIPGEY+LENVFQID+ RSKW+NLSVILSMI+IYRIIFFIMIK NEDVTPWVRGY+ARRR
Sbjct: 607 KIPGEYVLENVFQIDLHRSKWINLSVILSMIIIYRIIFFIMIKTNEDVTPWVRGYIARRR 666
Query: 587 MQQKSGAQNTTIAPDVLTQSPSLRAYISTQT 495
M+QK+G QNTT+APD LTQSPSLR YI+T+T
Sbjct: 667 MKQKNGTQNTTVAPDGLTQSPSLRNYIATRT 697
>pir||E86313 hypothetical protein F2H15.7 - Arabidopsis thaliana
gi|9665062|gb|AAF97264.1|AC034106_7 Contains similarity
to ATP dependent transmembrane transporter protein (wh3)
from Bombyx mori gb|AF229609 and contains an ABC
transporter PF|00005 domain. ESTs gb|Z18062,
gb|AI999375, gb|N96732, gb|F14058, gb|AV528782,
gb|AV559526, gb|AV556190, gb|AV562800, gb|AV559560,
gb|AV523165, gb|AV565094, gb|AV566285 come from this
gene. [Arabidopsis thaliana]
Length = 659
Score = 160 bits (406), Expect = 2e-38
Identities = 76/91 (83%), Positives = 86/91 (93%)
Frame = -3
Query: 767 KIPGEYILENVFQIDVSRSKWVNLSVILSMIVIYRIIFFIMIKINEDVTPWVRGYMARRR 588
KIPGEY+LENVFQID+ RSKW+NLSVILSMI+IYRIIFFIMIK NEDVTPWVRGY+ARRR
Sbjct: 563 KIPGEYVLENVFQIDLHRSKWINLSVILSMIIIYRIIFFIMIKTNEDVTPWVRGYIARRR 622
Query: 587 MQQKSGAQNTTIAPDVLTQSPSLRAYISTQT 495
M+QK+G QNTT+APD LTQSPSLR YI+T+T
Sbjct: 623 MKQKNGTQNTTVAPDGLTQSPSLRNYIATRT 653
>gb|AAM92819.1| putative ABC transporter [Oryza sativa (japonica cultivar-group)]
Length = 723
Score = 128 bits (321), Expect = 1e-28
Identities = 65/95 (68%), Positives = 79/95 (82%)
Frame = -3
Query: 791 DNQTPDLPKIPGEYILENVFQIDVSRSKWVNLSVILSMIVIYRIIFFIMIKINEDVTPWV 612
DNQ +LPKIPGEYILENVFQIDVSRSKW++L+V+ SMI IYR++FF MIK++EDVTPWV
Sbjct: 621 DNQDDELPKIPGEYILENVFQIDVSRSKWLDLAVLFSMIFIYRLLFFAMIKVSEDVTPWV 680
Query: 611 RGYMARRRMQQKSGAQNTTIAPDVLTQSPSLRAYI 507
RGY+ARRR+Q K GA+ A +SPSLRAY+
Sbjct: 681 RGYVARRRVQGK-GARGRG-ADLSAARSPSLRAYV 713
>dbj|BAC22376.1| putative ABC transporter family protein [Oryza sativa (japonica
cultivar-group)] gi|24414247|dbj|BAC22487.1| putative
ABC transporter family protein [Oryza sativa (japonica
cultivar-group)]
Length = 724
Score = 63.5 bits (153), Expect = 3e-09
Identities = 26/49 (53%), Positives = 42/49 (85%)
Frame = -3
Query: 764 IPGEYILENVFQIDVSRSKWVNLSVILSMIVIYRIIFFIMIKINEDVTP 618
I GEYIL+N Q+++S SKWV+L+++++MI+IYR++F ++IKI+E V P
Sbjct: 665 ISGEYILKNYLQVELSYSKWVDLAILVAMIIIYRLLFLVIIKISEIVKP 713
>ref|NP_175561.1| ABC transporter family protein; protein id: At1g51500.1, supported
by cDNA: gi_15724277, supported by cDNA: gi_20260525
[Arabidopsis thaliana] gi|25297510|pir||D96553
hypothetical protein F5D21.6 [imported] - Arabidopsis
thaliana gi|12325360|gb|AAG52619.1|AC024261_6
ATP-dependent transmembrane transporter, putative;
39775-42780 [Arabidopsis thaliana]
gi|15724278|gb|AAL06532.1|AF412079_1 At1g51500/F5D21_6
[Arabidopsis thaliana] gi|20260526|gb|AAM13161.1|
ATP-dependent transmembrane transporter, putative
[Arabidopsis thaliana]
Length = 687
Score = 60.5 bits (145), Expect = 3e-08
Identities = 25/63 (39%), Positives = 43/63 (67%)
Frame = -3
Query: 770 PKIPGEYILENVFQIDVSRSKWVNLSVILSMIVIYRIIFFIMIKINEDVTPWVRGYMARR 591
PK+ GE ++ +F + V+ SKW +LS I+ ++V YRI+FFI++K+ E P ++ A+R
Sbjct: 586 PKMTGEQVINKIFGVQVTHSKWWDLSAIVLILVCYRILFFIVLKLKERAEPALKAIQAKR 645
Query: 590 RMQ 582
M+
Sbjct: 646 TMK 648
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 665,192,617
Number of Sequences: 1393205
Number of extensions: 14422206
Number of successful extensions: 33023
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 31698
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32974
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 39775824764
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
