Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005470A_C01 KMC005470A_c01
(246 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_522495.1| PROBABLE AMINO ACID TRANSMEMBRANE ABC TRANSPORT... 33 1.4
ref|XP_218008.1| similar to TBP-associated factor 5 isoform 2; T... 30 6.9
ref|NP_195299.1| putative protein; protein id: At4g35740.1 [Arab... 30 9.0
>ref|NP_522495.1| PROBABLE AMINO ACID TRANSMEMBRANE ABC TRANSPORTER PROTEIN
[Ralstonia solanacearum] gi|17431406|emb|CAD18085.1|
PROBABLE AMINO ACID TRANSMEMBRANE ABC TRANSPORTER
PROTEIN [Ralstonia solanacearum]
Length = 233
Score = 32.7 bits (73), Expect = 1.4
Identities = 15/39 (38%), Positives = 22/39 (55%)
Frame = -1
Query: 243 PSLSHIRFYYFSPQFILPSPILLLLRKHHVDAILNIVIL 127
P+L + F+YF +LP P L L +HH + + IV L
Sbjct: 70 PTLVQLMFWYFGISTLLPLPALDWLGEHHSEVVFAIVAL 108
>ref|XP_218008.1| similar to TBP-associated factor 5 isoform 2; TATA box binding
protein (TBP)-associated factor 2D; TAF5 RNA polymerase
II, TATA box binding protein (TBP)-associated factor,
100 kD; TATA box binding protein (TBP)-associated
factor, RNA polymerase II... [Rattus norvegicus]
Length = 565
Score = 30.4 bits (67), Expect = 6.9
Identities = 27/90 (30%), Positives = 41/90 (45%), Gaps = 8/90 (8%)
Frame = -1
Query: 246 PPSLSHIRFYYFSPQFILPSPILLLLRKHHVDAILNIVILSDIILRQ*SKSRWDLPIF-- 73
P ++ +FYY +L S L K+H+D + D I R KSR+ PIF
Sbjct: 235 PKPVASAQFYYMDTFILLSSGPEFCLLKYHID------LCRDDIRRYKPKSRYK-PIFRL 287
Query: 72 ------PICILTCILNFYSRGNRISVSIWF 1
I L+ + +FYSR +S+ + F
Sbjct: 288 PTTSAADITSLSAVNDFYSRILPLSLLVCF 317
>ref|NP_195299.1| putative protein; protein id: At4g35740.1 [Arabidopsis thaliana]
gi|7486652|pir||T04679 hypothetical protein F8D20.250 -
Arabidopsis thaliana gi|3367592|emb|CAA20044.1| putative
protein [Arabidopsis thaliana]
gi|7270526|emb|CAB81483.1| putative protein [Arabidopsis
thaliana]
Length = 926
Score = 30.0 bits (66), Expect = 9.0
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = -1
Query: 228 IRFYYFSPQFILPSPILLLLRKHHVDAILNIVILSDI 118
+R Y +P+ I +L LRK H +LN++ + +I
Sbjct: 376 VRLLYVTPELIATKGFMLKLRKLHSRGLLNLIAIDEI 412
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 177,858,396
Number of Sequences: 1393205
Number of extensions: 2914005
Number of successful extensions: 5211
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5211
length of database: 448,689,247
effective HSP length: 57
effective length of database: 369,276,562
effective search space used: 8862637488
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
