Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005467A_C01 KMC005467A_c01
(756 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAA94511.1| ABC transporter homolog [Populus nigra] 375 e-103
dbj|BAC55994.1| putative ABC transporter [Oryza sativa (japonica... 363 1e-99
ref|NP_200887.1| ABC transporter family protein; protein id: At5... 356 2e-97
gb|AAH47181.1| Similar to ATP-binding cassette, sub-family F (GC... 233 3e-60
gb|AAG13902.1|AF261091_1 iron inhibited ABC transporter 2 [Homo ... 221 7e-57
>dbj|BAA94511.1| ABC transporter homolog [Populus nigra]
Length = 565
Score = 375 bits (962), Expect = e-103
Identities = 192/228 (84%), Positives = 208/228 (91%), Gaps = 6/228 (2%)
Frame = +3
Query: 90 MVSDASKKKAAQKKAAAAAKRGGKAATAA---ASSKAAASD---KAADKLANGIADMQIS 251
MVS+ASKKKAAQKKAAAAAKRGGKA + A++ AAASD + DKL+NG +QIS
Sbjct: 1 MVSEASKKKAAQKKAAAAAKRGGKAVATSSKTAAATAAASDSQNEGVDKLSNGFGALQIS 60
Query: 252 DRTCTGVLCSHPLSRDIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLT 431
DRTCTGVLCSHPLSRDIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLL
Sbjct: 61 DRTCTGVLCSHPLSRDIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLA 120
Query: 432 AIGHRELPIPEHMDIYHLTREIEASDMSALEAVVSCDEERLRLEKEAETLAAQDDGGGET 611
AIG RELPIP+HMDIYHLTREIEASDMS+LEAV+SCDEERL+LEKEAE LAA+DDGGGE
Sbjct: 121 AIGCRELPIPDHMDIYHLTREIEASDMSSLEAVISCDEERLKLEKEAEVLAAKDDGGGEA 180
Query: 612 LERIYERLEALDASTAEKRAAEILHGLGFDKKMQAKKTRDFSGGWRMR 755
L+RIYERLEA+DASTAEKRAAEIL+GLGF+KKMQ KKTRDFSGGWRMR
Sbjct: 181 LDRIYERLEAMDASTAEKRAAEILYGLGFNKKMQEKKTRDFSGGWRMR 228
>dbj|BAC55994.1| putative ABC transporter [Oryza sativa (japonica cultivar-group)]
Length = 592
Score = 363 bits (933), Expect = 1e-99
Identities = 185/222 (83%), Positives = 203/222 (91%)
Frame = +3
Query: 90 MVSDASKKKAAQKKAAAAAKRGGKAATAAASSKAAASDKAADKLANGIADMQISDRTCTG 269
MVSDASKKKAAQKKAAAAAKRG KA SS +++S AADK ANGIA +++SDRTCTG
Sbjct: 1 MVSDASKKKAAQKKAAAAAKRGAKA-----SSSSSSSSSAADKAANGIAALKLSDRTCTG 55
Query: 270 VLCSHPLSRDIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGHRE 449
VL SHPLSRDI IESLS+TFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIG RE
Sbjct: 56 VLASHPLSRDIHIESLSLTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGCRE 115
Query: 450 LPIPEHMDIYHLTREIEASDMSALEAVVSCDEERLRLEKEAETLAAQDDGGGETLERIYE 629
LPIPEHMDIYHL+ EIEASDMSAL+AV+ CDEER++LEKEAE L+AQDDGGG+ L+RIYE
Sbjct: 116 LPIPEHMDIYHLSSEIEASDMSALQAVICCDEERMKLEKEAEILSAQDDGGGDALDRIYE 175
Query: 630 RLEALDASTAEKRAAEILHGLGFDKKMQAKKTRDFSGGWRMR 755
RLEALDASTAEKRAAEIL GLGF+K+MQAKKT+DFSGGWRMR
Sbjct: 176 RLEALDASTAEKRAAEILFGLGFNKQMQAKKTQDFSGGWRMR 217
>ref|NP_200887.1| ABC transporter family protein; protein id: At5g60790.1
[Arabidopsis thaliana] gi|10176907|dbj|BAB10100.1| ABC
transporter [Arabidopsis thaliana]
gi|22655234|gb|AAM98207.1| ABC transporter homolog
PnATH-like protein [Arabidopsis thaliana]
gi|24030366|gb|AAN41346.1| putative ABC transporter
homolog PnATH [Arabidopsis thaliana]
Length = 595
Score = 356 bits (913), Expect = 2e-97
Identities = 181/222 (81%), Positives = 196/222 (87%)
Frame = +3
Query: 90 MVSDASKKKAAQKKAAAAAKRGGKAATAAASSKAAASDKAADKLANGIADMQISDRTCTG 269
MVSDASKKKAAQKKAAAAAKRGGKAA A S AA S D L++G+ +QISDRTCTG
Sbjct: 1 MVSDASKKKAAQKKAAAAAKRGGKAA--APSKSAATSSNGVDSLSSGVDALQISDRTCTG 58
Query: 270 VLCSHPLSRDIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGHRE 449
VLCSHP SRDIRIESLSVTFHG+DLIVDS LELNYGRRYGLLGLNGCGKSTLLTAIG RE
Sbjct: 59 VLCSHPQSRDIRIESLSVTFHGYDLIVDSMLELNYGRRYGLLGLNGCGKSTLLTAIGRRE 118
Query: 450 LPIPEHMDIYHLTREIEASDMSALEAVVSCDEERLRLEKEAETLAAQDDGGGETLERIYE 629
+PIP+ MDIYHL+ EIEA+DMS+LEAVVSCDEERLRLEKE E L QDDGGGE L+ IYE
Sbjct: 119 IPIPDQMDIYHLSHEIEATDMSSLEAVVSCDEERLRLEKEVEILVQQDDGGGERLQSIYE 178
Query: 630 RLEALDASTAEKRAAEILHGLGFDKKMQAKKTRDFSGGWRMR 755
RL+A+DA TAEKRAAEIL GLGFDK+MQAKKT+DFSGGWRMR
Sbjct: 179 RLDAMDAETAEKRAAEILFGLGFDKEMQAKKTKDFSGGWRMR 220
>gb|AAH47181.1| Similar to ATP-binding cassette, sub-family F (GCN20), member 2
[Danio rerio]
Length = 613
Score = 233 bits (593), Expect = 3e-60
Identities = 127/234 (54%), Positives = 154/234 (65%), Gaps = 12/234 (5%)
Frame = +3
Query: 90 MVSDASKKKAAQKKAAAAAKR---------GGKAATAAASSKAAASDKAADKLANGIADM 242
M SD +KKKAA+KK AA A+ G A AA D LA + +
Sbjct: 1 MPSDLAKKKAAKKKEAAKARGRTRKPEDGVNGDAEKPEIQENGAAEVNGVDSLAKELDEF 60
Query: 243 QISD---RTCTGVLCSHPLSRDIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCG 413
++ R TGVL SHP S D+ I SLS+TFHG +L+ D+ LELN GRRYGL+GLNG G
Sbjct: 61 ELKKTEARAVTGVLASHPNSTDVHISSLSLTFHGQELLSDTSLELNSGRRYGLIGLNGTG 120
Query: 414 KSTLLTAIGHRELPIPEHMDIYHLTREIEASDMSALEAVVSCDEERLRLEKEAETLAAQD 593
KS LL+AI HRE+PIPEH+DIYHLTRE+ S+ +AL+ V+ DEER++LEKEAE L A +
Sbjct: 121 KSMLLSAISHREVPIPEHIDIYHLTREMAPSEKTALQCVMEVDEERIKLEKEAERL-AHE 179
Query: 594 DGGGETLERIYERLEALDASTAEKRAAEILHGLGFDKKMQAKKTRDFSGGWRMR 755
D E L +YERLE LDA A RA+ ILHGLGF MQ KK +DFSGGWRMR
Sbjct: 180 DSECEKLMELYERLEELDADKASMRASRILHGLGFTTSMQQKKLKDFSGGWRMR 233
Score = 42.7 bits (99), Expect = 0.006
Identities = 38/142 (26%), Positives = 69/142 (47%), Gaps = 15/142 (10%)
Frame = +3
Query: 168 TAAASSKAAASDKAADKL-ANGIADMQISDRTCTGVL--CSHPLSRDIRIESLSVTFHGH 338
+A + +A + +K K+ A+G+ + ++D+T + C I ++++S + +
Sbjct: 346 SAKLARQAQSKEKTLQKMVASGLTERVVNDKTLSFYFPPCGKIPPPVIMVQNVSFRYSEN 405
Query: 339 DLIVDSELE--LNYGRRYGLLGLNGCGKSTLLTAIGHRELP----IPEHMDI------YH 482
+ LE ++ R L+G NG GKSTLL + LP I +H + H
Sbjct: 406 TPYIYKNLEFGIDLDTRVALVGPNGAGKSTLLKLLTGELLPSDGMIRKHSHVKIGRYHQH 465
Query: 483 LTREIEASDMSALEAVVSCDEE 548
LT ++E D+S LE ++ C E
Sbjct: 466 LTEQLEL-DLSPLEYMMKCYPE 486
>gb|AAG13902.1|AF261091_1 iron inhibited ABC transporter 2 [Homo sapiens]
gi|10179836|gb|AAG13903.1|AF261092_1 iron inhibited ABC
transporter 1 [Homo sapiens]
Length = 623
Score = 221 bits (564), Expect = 7e-57
Identities = 126/237 (53%), Positives = 154/237 (64%), Gaps = 15/237 (6%)
Frame = +3
Query: 90 MVSDASKKKAAQKKAAAAAKR---------GGKAATAAASSKAAASDKAA---DKLANGI 233
M SD +KKKAA+KK AA A++ G A+ K A+ + D L +
Sbjct: 1 MPSDLAKKKAAKKKEAAKARQRPRKGHEENGDVVTEPQAAEKNEANGRETTEVDLLTKEL 60
Query: 234 ADMQISD---RTCTGVLCSHPLSRDIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLN 404
D ++ R TGVL SHP S D+ I +LS+TFHG +L+ D++LELN GRRYGL+GLN
Sbjct: 61 EDFEMKKAAARAVTGVLASHPNSTDVHIINLSLTFHGQELLSDTKLELNSGRRYGLIGLN 120
Query: 405 GCGKSTLLTAIGHRELPIPEHMDIYHLTREIEASDMSALEAVVSCDEERLRLEKEAETLA 584
G GKS LL+AIG RE+PIPEH+DIYHLTRE+ SD + L V+ D ER LEKEAE L
Sbjct: 121 GIGKSMLLSAIGKREVPIPEHIDIYHLTREMPPSDKTPLHCVMEVDTERAMLEKEAERL- 179
Query: 585 AQDDGGGETLERIYERLEALDASTAEKRAAEILHGLGFDKKMQAKKTRDFSGGWRMR 755
A +D E L +YERLE LDA AE RA+ ILHGLGF MQ KK +DFSGGWRMR
Sbjct: 180 AHEDAECEKLMELYERLEELDADKAEMRASRILHGLGFTPAMQRKKLKDFSGGWRMR 236
Score = 39.7 bits (91), Expect = 0.047
Identities = 37/142 (26%), Positives = 68/142 (47%), Gaps = 15/142 (10%)
Frame = +3
Query: 168 TAAASSKAAASDKAADKL-ANGIADMQISDRTCTGVL--CSHPLSRDIRIESLSVTFHGH 338
+A + +A + +K K+ A+G+ + +SD+T + C I ++++S +
Sbjct: 349 SAKLARQAQSKEKTLQKMMASGLTERVVSDKTLSFYFPPCGKIPPPVIMVQNVSFKYTKD 408
Query: 339 DLIVDSELE--LNYGRRYGLLGLNGCGKSTLLTAIGHRELP----IPEHMDI------YH 482
+ + LE ++ R L+G NG GKSTLL + LP I +H + H
Sbjct: 409 GPCIYNNLEFGIDLDTRVALVGPNGAGKSTLLKLLTGELLPTDGMIRKHSHVKIGRYHQH 468
Query: 483 LTREIEASDMSALEAVVSCDEE 548
L +++ D+S LE ++ C E
Sbjct: 469 LQEQLDL-DLSPLEYMMKCYPE 489
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 643,537,770
Number of Sequences: 1393205
Number of extensions: 14337716
Number of successful extensions: 90755
Number of sequences better than 10.0: 2522
Number of HSP's better than 10.0 without gapping: 69067
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85848
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 36877108757
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
