Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005463A_C01 KMC005463A_c01
(658 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_187685.1| glycosyl hydrolase family 51; protein id: At3g1... 179 4e-44
gb|AAK50089.1|AF372949_1 AT3g10740/T7M13_18 [Arabidopsis thalian... 179 4e-44
dbj|BAC10349.1| putative arabinoxylan narabinofuranohydrolase is... 160 1e-38
gb|AAD40132.1|AF149413_13 contains similarity to arabinosidase [... 157 1e-37
ref|NP_197984.2| glycosyl hydrolase family 51; protein id: At5g2... 157 1e-37
>ref|NP_187685.1| glycosyl hydrolase family 51; protein id: At3g10740.1, supported by
cDNA: gi_13937190 [Arabidopsis thaliana]
gi|6630556|gb|AAF19575.1|AC011708_18 putative
alpha-L-arabinofuranosidase [Arabidopsis thaliana]
Length = 678
Score = 179 bits (453), Expect = 4e-44
Identities = 92/151 (60%), Positives = 115/151 (75%), Gaps = 1/151 (0%)
Frame = -3
Query: 656 NSNDRTWSPDAIVFNSHQHYGTPSYWLQRMFTESSGATLLKSTLQTSSQSLVASAIEYAN 477
N+NDR W+PDAIVFNS YGTPSYW+QR F ESSGATLL STL+ +S SLVASAI + N
Sbjct: 509 NTNDRRWNPDAIVFNSSHLYGTPSYWVQRFFAESSGATLLTSTLKGNSTSLVASAISWKN 568
Query: 476 SEDKKNYIRVKVVNFGSGSESFRISINGLKSKV-KQSGSRKTVLTAAHVMDENSFSEPNT 300
+ K+YIR+K VNFG+ SE+ ++ + GL V + SGS+KTVLT+ +VMDENSFS+P
Sbjct: 569 --NGKDYIRIKAVNFGANSENMQVLVTGLDPNVMRVSGSKKTVLTSTNVMDENSFSQPEK 626
Query: 299 IVPQPTPIEGASTDMKVELPPHSVTSFDLLK 207
+VP + +E A DM V LPPHS +SFDLLK
Sbjct: 627 VVPHESLLELAEEDMTVVLPPHSFSSFDLLK 657
>gb|AAK50089.1|AF372949_1 AT3g10740/T7M13_18 [Arabidopsis thaliana]
gi|23506047|gb|AAN28883.1| At3g10740/T7M13_18
[Arabidopsis thaliana]
Length = 678
Score = 179 bits (453), Expect = 4e-44
Identities = 92/151 (60%), Positives = 115/151 (75%), Gaps = 1/151 (0%)
Frame = -3
Query: 656 NSNDRTWSPDAIVFNSHQHYGTPSYWLQRMFTESSGATLLKSTLQTSSQSLVASAIEYAN 477
N+NDR W+PDAIVFNS YGTPSYW+QR F ESSGATLL STL+ +S SLVASAI + N
Sbjct: 509 NTNDRRWNPDAIVFNSSHLYGTPSYWVQRFFAESSGATLLTSTLKGNSTSLVASAISWKN 568
Query: 476 SEDKKNYIRVKVVNFGSGSESFRISINGLKSKV-KQSGSRKTVLTAAHVMDENSFSEPNT 300
+ K+YIR+K VNFG+ SE+ ++ + GL V + SGS+KTVLT+ +VMDENSFS+P
Sbjct: 569 --NGKDYIRIKAVNFGANSENMQVLVTGLDPNVMRVSGSKKTVLTSTNVMDENSFSQPEK 626
Query: 299 IVPQPTPIEGASTDMKVELPPHSVTSFDLLK 207
+VP + +E A DM V LPPHS +SFDLLK
Sbjct: 627 VVPHESLLELAEEDMTVVLPPHSFSSFDLLK 657
>dbj|BAC10349.1| putative arabinoxylan narabinofuranohydrolase isoenzyme AXAH-I
[Oryza sativa (japonica cultivar-group)]
Length = 664
Score = 160 bits (405), Expect = 1e-38
Identities = 77/150 (51%), Positives = 108/150 (71%), Gaps = 1/150 (0%)
Frame = -3
Query: 656 NSNDRTWSPDAIVFNSHQHYGTPSYWLQRMFTESSGATLLKSTLQTSSQS-LVASAIEYA 480
N NDR WSPDAIVFNS Q+YG P+YW+ F +S GAT S +Q SS + LVASAI +
Sbjct: 506 NDNDRRWSPDAIVFNSWQNYGCPNYWMLHFFKDSCGATFHPSNIQISSYNQLVASAITWQ 565
Query: 479 NSEDKKNYIRVKVVNFGSGSESFRISINGLKSKVKQSGSRKTVLTAAHVMDENSFSEPNT 300
NS+DK Y+++K+VNFG+ + + IS++GL +K SGS+KTVLT++ +DENSF +P
Sbjct: 566 NSKDKSTYLKIKLVNFGNQAVNLSISVSGLDEGIKSSGSKKTVLTSSGPLDENSFQQPQK 625
Query: 299 IVPQPTPIEGASTDMKVELPPHSVTSFDLL 210
+ P +P++ A+ M V + P+S+TSFDLL
Sbjct: 626 VAPVSSPVDNANEQMGVLVDPYSLTSFDLL 655
>gb|AAD40132.1|AF149413_13 contains similarity to arabinosidase [Arabidopsis thaliana]
Length = 521
Score = 157 bits (397), Expect = 1e-37
Identities = 84/150 (56%), Positives = 106/150 (70%), Gaps = 1/150 (0%)
Frame = -3
Query: 656 NSNDRTWSPDAIVFNSHQHYGTPSYWLQRMFTESSGATLLKSTLQTSSQSLVASAIEYAN 477
N+NDR W PDAIVFNS YGTPSYW+Q FTESSGATLL STL+ + S+ ASAI +
Sbjct: 355 NTNDRRWIPDAIVFNSSHLYGTPSYWVQHFFTESSGATLLNSTLKGKTSSVEASAISF-- 412
Query: 476 SEDKKNYIRVKVVNFGSGSESFRISINGLKSKVKQSGSRKTVLTAAHVMDENSFSEPNTI 297
+ K+YI++K VNFG S + ++++ GL +K GS+K VLT+A VMDENSFS PN I
Sbjct: 413 QTNGKDYIQIKAVNFGEQSVNLKVAVTGLMAKF--YGSKKKVLTSASVMDENSFSNPNMI 470
Query: 296 VPQPTPIE-GASTDMKVELPPHSVTSFDLL 210
VPQ + +E D+ LPPHS +SFDLL
Sbjct: 471 VPQESLLEMTEQEDLMFVLPPHSFSSFDLL 500
>ref|NP_197984.2| glycosyl hydrolase family 51; protein id: At5g26120.1, supported by
cDNA: gi_17380937 [Arabidopsis thaliana]
gi|17380938|gb|AAL36281.1| putative arabinosidase
[Arabidopsis thaliana]
Length = 674
Score = 157 bits (397), Expect = 1e-37
Identities = 84/150 (56%), Positives = 106/150 (70%), Gaps = 1/150 (0%)
Frame = -3
Query: 656 NSNDRTWSPDAIVFNSHQHYGTPSYWLQRMFTESSGATLLKSTLQTSSQSLVASAIEYAN 477
N+NDR W PDAIVFNS YGTPSYW+Q FTESSGATLL STL+ + S+ ASAI +
Sbjct: 508 NTNDRRWIPDAIVFNSSHLYGTPSYWVQHFFTESSGATLLNSTLKGKTSSVEASAISF-- 565
Query: 476 SEDKKNYIRVKVVNFGSGSESFRISINGLKSKVKQSGSRKTVLTAAHVMDENSFSEPNTI 297
+ K+YI++K VNFG S + ++++ GL +K GS+K VLT+A VMDENSFS PN I
Sbjct: 566 QTNGKDYIQIKAVNFGEQSVNLKVAVTGLMAKF--YGSKKKVLTSASVMDENSFSNPNMI 623
Query: 296 VPQPTPIE-GASTDMKVELPPHSVTSFDLL 210
VPQ + +E D+ LPPHS +SFDLL
Sbjct: 624 VPQESLLEMTEQEDLMFVLPPHSFSSFDLL 653
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 527,986,389
Number of Sequences: 1393205
Number of extensions: 10517037
Number of successful extensions: 26136
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 25294
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26113
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 28006887348
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
