Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005462A_C01 KMC005462A_c01
(583 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_174147.1| hypothetical protein; protein id: At1g28260.1 [... 52 4e-06
gb|AAO42070.1| unknown protein [Arabidopsis thaliana] 52 4e-06
ref|NP_572797.1| CG11245-PA [Drosophila melanogaster] gi|7292766... 43 0.003
ref|NP_477613.1| wsv091 [shrimp white spot syndrome virus] gi|17... 42 0.004
gb|AAL89017.1| WSSV149 [shrimp white spot syndrome virus] 42 0.004
>ref|NP_174147.1| hypothetical protein; protein id: At1g28260.1 [Arabidopsis
thaliana] gi|25518724|pir||G86408 hypothetical protein
F3H9.9 - Arabidopsis thaliana
gi|9795611|gb|AAF98429.1|AC021044_8 Hypothetical protein
[Arabidopsis thaliana]
Length = 880
Score = 52.4 bits (124), Expect = 4e-06
Identities = 53/173 (30%), Positives = 73/173 (41%), Gaps = 7/173 (4%)
Frame = +1
Query: 1 GTELRAERIREAAMKIASRSNH-LQKWITCDKLGKQILVARPYEDQDRKKGENVKSNGNR 177
G ELR +RI +A+ I +R QKW+ D + + GE NG
Sbjct: 489 GKELRLQRIISSAIDITTRQKKGSQKWLFFDNQRTHFYTT---SGELQSNGELFHGNGE- 544
Query: 178 TGGEEPNQQTNKNREKHGKWMTEDNPSSSSTDGKSSVVEEEEEVILFRPLTRYNSAPSYP 357
+NR K +T + + SV EEEEVIL +PL R SAP Y
Sbjct: 545 ----------GRNR----KCVTIGPVEIIPLENERSVPVEEEEVILLKPLVRCQSAPIYS 590
Query: 358 STSPDDQISP--KDKDDQSLPSDDCLRRATSLLMAQTPDQTQ----TDPWGFH 498
S +S +Q+ S+D LRR SL+ +++ TQ TDP H
Sbjct: 591 SGIAAKPLSSDCTTSGNQTTTSNDSLRRTLSLIGSESFSFTQGLKDTDPQHLH 643
>gb|AAO42070.1| unknown protein [Arabidopsis thaliana]
Length = 880
Score = 52.4 bits (124), Expect = 4e-06
Identities = 53/173 (30%), Positives = 73/173 (41%), Gaps = 7/173 (4%)
Frame = +1
Query: 1 GTELRAERIREAAMKIASRSNH-LQKWITCDKLGKQILVARPYEDQDRKKGENVKSNGNR 177
G ELR +RI +A+ I +R QKW+ D + + GE NG
Sbjct: 489 GKELRLQRIISSAIDITTRQKKGSQKWLFFDNQRTHFYTT---SGELQSNGELFHGNGE- 544
Query: 178 TGGEEPNQQTNKNREKHGKWMTEDNPSSSSTDGKSSVVEEEEEVILFRPLTRYNSAPSYP 357
+NR K +T + + SV EEEEVIL +PL R SAP Y
Sbjct: 545 ----------GRNR----KCVTIGPVEIIPLENERSVPVEEEEVILLKPLVRCQSAPIYS 590
Query: 358 STSPDDQISP--KDKDDQSLPSDDCLRRATSLLMAQTPDQTQ----TDPWGFH 498
S +S +Q+ S+D LRR SL+ +++ TQ TDP H
Sbjct: 591 SGIAAKPLSSDCTTSGNQTTTSNDSLRRTLSLIGSESFSFTQGLKDTDPQHLH 643
>ref|NP_572797.1| CG11245-PA [Drosophila melanogaster] gi|7292766|gb|AAF48161.1|
CG11245-PA [Drosophila melanogaster]
Length = 1545
Score = 43.1 bits (100), Expect = 0.003
Identities = 37/145 (25%), Positives = 56/145 (38%), Gaps = 33/145 (22%)
Frame = +1
Query: 151 ENVKSNGNRTGGEEPNQQTNKNREKHGKWM---------TEDNPSSSSTDGKSSVVEEEE 303
E S+ + T +E ++ +K R K K M E+ P + + SV+E E
Sbjct: 415 ERRSSHDSTTTNDEDLKERSKRRSKKSKKMRHKITAIVEVENAPQAQPVEHMPSVLELNE 474
Query: 304 EVILFRPLTRYNSAPSYPSTSPDDQIS------------------------PKDKDDQSL 411
E +L +PLT + + S P+ SP + + PKD+DD SL
Sbjct: 475 ESLLIQPLTSGSGSSSTPTPSPKPKFTVNVETVEEHHQIHKIFKLPKKKTVPKDQDDSSL 534
Query: 412 PSDDCLRRATSLLMAQTPDQTQTDP 486
P M P T+T P
Sbjct: 535 PEG---------FMKAAPKTTKTSP 550
>ref|NP_477613.1| wsv091 [shrimp white spot syndrome virus] gi|17016489|gb|AAL33095.1|
wsv091 [shrimp white spot syndrome virus]
Length = 1145
Score = 42.4 bits (98), Expect = 0.004
Identities = 32/136 (23%), Positives = 57/136 (41%), Gaps = 23/136 (16%)
Frame = +1
Query: 127 EDQDRKKGENVKSNGNRTGGEEPNQQTNKNREKHGKWMTEDNPS---------------- 258
+++++++ +SNGN EE QQ RE+ K D+ S
Sbjct: 667 KEEEQQQQPEEESNGNENQEEEQQQQQQPEREEENKDADSDSDSDSSSSSSSSSSSSSSS 726
Query: 259 -------SSSTDGKSSVVEEEEEVILFRPLTRYNSAPSYPSTSPDDQISPKDKDDQSLPS 417
SSS++ ++ +EEE + R + PS ++SP +++ Q PS
Sbjct: 727 SSSSSSSSSSSENEAEKKKEEEVPAKIQKRKRLSERPSEAASSPKRMRVEEEQQQQLSPS 786
Query: 418 DDCLRRATSLLMAQTP 465
D L+ A +M + P
Sbjct: 787 LDILQTAVDEMMEEIP 802
>gb|AAL89017.1| WSSV149 [shrimp white spot syndrome virus]
Length = 880
Score = 42.4 bits (98), Expect = 0.004
Identities = 32/136 (23%), Positives = 57/136 (41%), Gaps = 23/136 (16%)
Frame = +1
Query: 127 EDQDRKKGENVKSNGNRTGGEEPNQQTNKNREKHGKWMTEDNPS---------------- 258
+++++++ +SNGN EE QQ RE+ K D+ S
Sbjct: 402 KEEEQQQQPEEESNGNENQEEEQQQQQQPEREEENKDADSDSDSDSSSSSSSSSSSSSSS 461
Query: 259 -------SSSTDGKSSVVEEEEEVILFRPLTRYNSAPSYPSTSPDDQISPKDKDDQSLPS 417
SSS++ ++ +EEE + R + PS ++SP +++ Q PS
Sbjct: 462 SSSSSSSSSSSENEAEKKKEEEVPAKIQKRKRLSERPSEAASSPKRMRVEEEQQQQLSPS 521
Query: 418 DDCLRRATSLLMAQTP 465
D L+ A +M + P
Sbjct: 522 LDILQTAVDEMMEEIP 537
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.307 0.126 0.360
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 524,098,904
Number of Sequences: 1393205
Number of extensions: 11940976
Number of successful extensions: 38569
Number of sequences better than 10.0: 238
Number of HSP's better than 10.0 without gapping: 30790
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36823
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21712003912
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
