Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005460A_C01 KMC005460A_c01
(576 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAA98203.1| emb|CAB77600.1~gene_id:K3D20.2~similar to unknow... 250 8e-66
ref|NP_568526.1| putative protein; protein id: At5g35180.1, supp... 250 8e-66
ref|NP_193639.1| hypothetical protein; protein id: At4g19040.1 [... 54 2e-06
ref|NP_199369.2| putative protein; protein id: At5g45560.1, supp... 51 9e-06
gb|AAK21344.1|AC024594_8 unknown protein [Oryza sativa (japonica... 50 2e-05
>dbj|BAA98203.1| emb|CAB77600.1~gene_id:K3D20.2~similar to unknown protein
[Arabidopsis thaliana]
Length = 767
Score = 250 bits (639), Expect = 8e-66
Identities = 119/172 (69%), Positives = 140/172 (81%), Gaps = 8/172 (4%)
Frame = +3
Query: 84 LNKSGS--GGSDRSD------DRGIFEYFGWVYHLGVNSLGHEYCHLRFLFIRGKHLSMY 239
LN SGS G RS + G FEYFGWVYHLGVN +GHEYC+LRFLFIRGK++ MY
Sbjct: 33 LNHSGSHSGSHSRSSSSAGGGEGGTFEYFGWVYHLGVNKIGHEYCNLRFLFIRGKYVEMY 92
Query: 240 KRDPHEYPSLKPIRQGVVGPALMVEELGRRRVNNGDLYVLRFYNRLDETKKGEIACATAG 419
KRDPHE P +KPIR+GV+GP +++EELGRR+VN+GD+YV+RFYNRLDE++KGEIACATAG
Sbjct: 93 KRDPHENPDIKPIRRGVIGPTMVIEELGRRKVNHGDVYVIRFYNRLDESRKGEIACATAG 152
Query: 420 EVRGWTEAFDHAKQQVEYELSRGGSARDKLNMEAEINLEGHRPRVRRVFHGL 575
E W EAF+ AKQQ EY LSRGGS R KL+MEA I+LEGHRPRVRR +GL
Sbjct: 153 EALKWVEAFEEAKQQAEYALSRGGSTRTKLSMEANIDLEGHRPRVRRYAYGL 204
>ref|NP_568526.1| putative protein; protein id: At5g35180.1, supported by cDNA:
gi_16930704 [Arabidopsis thaliana]
gi|16930705|gb|AAL32018.1|AF436836_1 AT5g35180/T25C13_60
[Arabidopsis thaliana]
Length = 778
Score = 250 bits (639), Expect = 8e-66
Identities = 119/172 (69%), Positives = 140/172 (81%), Gaps = 8/172 (4%)
Frame = +3
Query: 84 LNKSGS--GGSDRSD------DRGIFEYFGWVYHLGVNSLGHEYCHLRFLFIRGKHLSMY 239
LN SGS G RS + G FEYFGWVYHLGVN +GHEYC+LRFLFIRGK++ MY
Sbjct: 33 LNHSGSHSGSHSRSSSSAGGGEGGTFEYFGWVYHLGVNKIGHEYCNLRFLFIRGKYVEMY 92
Query: 240 KRDPHEYPSLKPIRQGVVGPALMVEELGRRRVNNGDLYVLRFYNRLDETKKGEIACATAG 419
KRDPHE P +KPIR+GV+GP +++EELGRR+VN+GD+YV+RFYNRLDE++KGEIACATAG
Sbjct: 93 KRDPHENPDIKPIRRGVIGPTMVIEELGRRKVNHGDVYVIRFYNRLDESRKGEIACATAG 152
Query: 420 EVRGWTEAFDHAKQQVEYELSRGGSARDKLNMEAEINLEGHRPRVRRVFHGL 575
E W EAF+ AKQQ EY LSRGGS R KL+MEA I+LEGHRPRVRR +GL
Sbjct: 153 EALKWVEAFEEAKQQAEYALSRGGSTRTKLSMEANIDLEGHRPRVRRYAYGL 204
>ref|NP_193639.1| hypothetical protein; protein id: At4g19040.1 [Arabidopsis
thaliana] gi|7485424|pir||T05041 hypothetical protein
F13C5.210 - Arabidopsis thaliana
gi|2832632|emb|CAA16761.1| hypothetical protein
[Arabidopsis thaliana] gi|7268699|emb|CAB78906.1|
hypothetical protein [Arabidopsis thaliana]
Length = 679
Score = 53.5 bits (127), Expect = 2e-06
Identities = 28/108 (25%), Positives = 51/108 (46%)
Frame = +3
Query: 141 YFGWVYHLGVNSLGHEYCHLRFLFIRGKHLSMYKRDPHEYPSLKPIRQGVVGPALMVEEL 320
Y GW+ G +G Y H+R+ + + L+ YK+ P +Y PI+ ++ VE+
Sbjct: 6 YEGWMVRYGRRKIGRSYIHMRYFVLEPRLLAYYKKKPQDYQ--VPIKTMLIDGNCRVEDR 63
Query: 321 GRRRVNNGDLYVLRFYNRLDETKKGEIACATAGEVRGWTEAFDHAKQQ 464
G + + +YVL YN+ +++ + +A E W E + Q
Sbjct: 64 GLKTHHGHMVYVLSVYNKKEKSHRITMAAFNIQEALMWKEKIESVIDQ 111
>ref|NP_199369.2| putative protein; protein id: At5g45560.1, supported by cDNA:
gi_18086358 [Arabidopsis thaliana]
gi|18086359|gb|AAL57642.1| AT5g45560/MFC19_23
[Arabidopsis thaliana]
Length = 719
Score = 51.2 bits (121), Expect = 9e-06
Identities = 30/117 (25%), Positives = 53/117 (44%)
Frame = +3
Query: 141 YFGWVYHLGVNSLGHEYCHLRFLFIRGKHLSMYKRDPHEYPSLKPIRQGVVGPALMVEEL 320
Y GW+ G +G Y H+R+ + + L+ YK+ P + + PI+ V+ VE+
Sbjct: 6 YEGWMVRYGRRKIGRSYIHMRYFVLEPRLLAYYKKKPQD--NQLPIKTMVIDGNCRVEDR 63
Query: 321 GRRRVNNGDLYVLRFYNRLDETKKGEIACATAGEVRGWTEAFDHAKQQVEYELSRGG 491
G + + +YVL YN+ ++ + +A E W E + Q + L G
Sbjct: 64 GLKTHHGHMVYVLSIYNKKEKHHRITMAAFNIQEALMWKEKIECVIDQHQDSLVPSG 120
>gb|AAK21344.1|AC024594_8 unknown protein [Oryza sativa (japonica cultivar-group)]
Length = 773
Score = 50.4 bits (119), Expect = 2e-05
Identities = 34/138 (24%), Positives = 56/138 (39%), Gaps = 6/138 (4%)
Frame = +3
Query: 39 AVAAAVSTAGTTGSVLNKSGSGGSDRSDDRGIFEYFGWVYHLGVNSLGHEYCHLRFLFIR 218
A AAAV A G+ G+GG + G GW+Y + N LG +Y R+ +
Sbjct: 16 AAAAAVPAAAVAGT-----GAGGGEE----GRMRMEGWLYLIRSNRLGLQYSRKRYFVLE 66
Query: 219 GKHLSMYKRDPHEYPSLK------PIRQGVVGPALMVEELGRRRVNNGDLYVLRFYNRLD 380
L +K P S P+R ++ + V + GR V+ Y+ YN +
Sbjct: 67 DAALRCFKAPPPPSSSSSSSKREDPVRSAIIDSCIRVTDNGRESVHRSVFYIFTLYNASN 126
Query: 381 ETKKGEIACATAGEVRGW 434
+ ++ ++ E W
Sbjct: 127 HYDQLKLGARSSEEAARW 144
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 547,952,221
Number of Sequences: 1393205
Number of extensions: 13050278
Number of successful extensions: 38637
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 36931
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38596
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 21530810025
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
