Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005456A_C01 KMC005456A_c01
(500 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_200823.1| putative protein; protein id: At5g60150.1 [Arab... 63 2e-09
dbj|BAA97496.1| gene_id:F15L12.4~unknown protein [Arabidopsis th... 63 2e-09
gb|EAA02337.1| agCP3995 [Anopheles gambiae str. PEST] 35 0.62
ref|NP_706076.1| orf, conserved hypothetical protein [Shigella f... 33 1.4
ref|NP_752102.1| Blue copper oxidase cueO precursor [Escherichia... 33 1.4
>ref|NP_200823.1| putative protein; protein id: At5g60150.1 [Arabidopsis thaliana]
Length = 1195
Score = 63.2 bits (152), Expect = 2e-09
Identities = 26/41 (63%), Positives = 32/41 (77%)
Frame = -2
Query: 499 ILTMKSGAVQNSPPHKPQHEPSPWSPVRRKSQAIGPFDCTK 377
ILT+KSG VQ+SP K EP PWSPV++ +Q +GPFDCTK
Sbjct: 1144 ILTLKSGRVQHSPTEKSAPEPGPWSPVKKSNQVVGPFDCTK 1184
>dbj|BAA97496.1| gene_id:F15L12.4~unknown protein [Arabidopsis thaliana]
Length = 888
Score = 63.2 bits (152), Expect = 2e-09
Identities = 26/41 (63%), Positives = 32/41 (77%)
Frame = -2
Query: 499 ILTMKSGAVQNSPPHKPQHEPSPWSPVRRKSQAIGPFDCTK 377
ILT+KSG VQ+SP K EP PWSPV++ +Q +GPFDCTK
Sbjct: 837 ILTLKSGRVQHSPTEKSAPEPGPWSPVKKSNQVVGPFDCTK 877
>gb|EAA02337.1| agCP3995 [Anopheles gambiae str. PEST]
Length = 408
Score = 34.7 bits (78), Expect = 0.62
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +2
Query: 353 MLHVVFGYFGTVKWSNGLAFTSHRGPRTWFMLRLVRG 463
++ G+FG + +NG + +H PR W LRL+ G
Sbjct: 181 VMSAAVGWFGDLMLTNGALYPTHDAPRGWLRLRLLNG 217
>ref|NP_706076.1| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301]
gi|24050328|gb|AAN41783.1|AE015049_7 orf, conserved
hypothetical protein [Shigella flexneri 2a str. 301]
Length = 529
Score = 33.5 bits (75), Expect = 1.4
Identities = 13/31 (41%), Positives = 17/31 (53%)
Frame = +2
Query: 371 GYFGTVKWSNGLAFTSHRGPRTWFMLRLVRG 463
G+FG +NG + H PR W LRL+ G
Sbjct: 221 GWFGDTLLTNGAIYPQHAAPRGWLRLRLLNG 251
>ref|NP_752102.1| Blue copper oxidase cueO precursor [Escherichia coli CFT073]
gi|26106460|gb|AAN78646.1|AE016755_146 Blue copper
oxidase cueO precursor [Escherichia coli CFT073]
Length = 529
Score = 33.5 bits (75), Expect = 1.4
Identities = 13/31 (41%), Positives = 17/31 (53%)
Frame = +2
Query: 371 GYFGTVKWSNGLAFTSHRGPRTWFMLRLVRG 463
G+FG +NG + H PR W LRL+ G
Sbjct: 221 GWFGDTLLTNGAIYPQHAAPRGWLRLRLLNG 251
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 397,030,211
Number of Sequences: 1393205
Number of extensions: 7568641
Number of successful extensions: 17466
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 16948
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17453
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15072921604
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
