Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005455A_C01 KMC005455A_c01
(646 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_662388.1| DNA mismatch repair protein MutS [Chlorobium te... 31 1.7
ref|NP_704861.1| hypothetical protein [Plasmodium falciparum 3D7... 33 3.3
ref|NP_700950.1| hypothetical protein [Plasmodium falciparum 3D7... 33 4.3
gb|AAC40800.1| unknown [Human herpesvirus 7] 33 4.3
ref|NP_043844.1| immediate-early protein IE2 [Human herpesvirus ... 33 4.3
>ref|NP_662388.1| DNA mismatch repair protein MutS [Chlorobium tepidum TLS]
gi|21647498|gb|AAM72730.1| DNA mismatch repair protein
MutS [Chlorobium tepidum TLS]
Length = 878
Score = 30.8 bits (68), Expect(2) = 1.7
Identities = 21/77 (27%), Positives = 38/77 (49%)
Frame = +1
Query: 385 ANNMPINQSNFKINCNKAKSIFICNNA*NGHKFNQTWLCTQYGS*AFTYSLGLHLSWASY 564
++N+ +S F + N+A SI NNA L + G T+ G+ ++W+
Sbjct: 676 SDNLTSGESTFLVEMNEAASIL--NNATE----RSLLLLDEIGRGTSTFD-GMSIAWSMC 728
Query: 565 QHV*DQLITNYLLKSHY 615
+++ DQL + L +HY
Sbjct: 729 EYIHDQLRSRTLFATHY 745
Score = 21.9 bits (45), Expect(2) = 1.7
Identities = 7/24 (29%), Positives = 15/24 (62%)
Frame = +2
Query: 326 PNWNNKTSYIQSLDHLIIKLQITC 397
PN K+SY++ + +++ Q+ C
Sbjct: 631 PNMAGKSSYLRQVGLVVLLAQVGC 654
>ref|NP_704861.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23505224|emb|CAD52004.1| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 1342
Score = 33.1 bits (74), Expect = 3.3
Identities = 26/108 (24%), Positives = 44/108 (40%), Gaps = 6/108 (5%)
Frame = +1
Query: 157 NHKKLKSQLFIFGFLNSISCRVSQNSLFSQKLSSQR--TMEPELYPNCEGRGIVLVQCTK 330
NH K++++ F+ LNS++ ++ N L +K Q + E+ N E
Sbjct: 1239 NHDKIRNEPFVVDILNSLNKNITSNELVLKKSKVQHLDVEKDEMDQNFE----------- 1287
Query: 331 LE*QNLIYSKFRSLNNQTANNMPINQSN----FKINCNKAKSIFICNN 462
+ Y K + +NN N M + N K N + IC+N
Sbjct: 1288 -----VTYVKLQMINNDNVNEMVLKNININDELKQNLYNQHFMQICHN 1330
>ref|NP_700950.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23496012|gb|AAN35674.1|AE014837_16 hypothetical
protein [Plasmodium falciparum 3D7]
Length = 3334
Score = 32.7 bits (73), Expect = 4.3
Identities = 26/96 (27%), Positives = 42/96 (43%)
Frame = +1
Query: 199 LNSISCRVSQNSLFSQKLSSQRTMEPELYPNCEGRGIVLVQCTKLE*QNLIYSKFRSLNN 378
+N I+ S N + ++ TM N G+VL+ + N+ + +N
Sbjct: 462 MNGINNNSSNNIM---NIAGSNTMSSSNNNNSVNSGVVLLGVSSGNMNNMDNNDQDKMNT 518
Query: 379 QTANNMPINQSNFKINCNKAKSIFICNNA*NGHKFN 486
T NN N +N N N + + ICNN+ +G K N
Sbjct: 519 TTNNNNNTNNNNNNNNNNNSNNN-ICNNSLHGAKSN 553
>gb|AAC40800.1| unknown [Human herpesvirus 7]
Length = 940
Score = 32.7 bits (73), Expect = 4.3
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Frame = +1
Query: 250 LSSQRTMEPELYPNCEGRGIVLVQCTK---LE*QNLIYSKFRSLNNQTANNMPINQSNFK 420
+SSQ+T+E LY N G G VL C + Q + ++ ++ T +N I NF
Sbjct: 61 MSSQQTVERNLYANNIGNGNVLSYCRQDSLQGNQGTYFPTYQGFHSNTPHNFSIENFNFG 120
Query: 421 IN 426
N
Sbjct: 121 TN 122
>ref|NP_043844.1| immediate-early protein IE2 [Human herpesvirus 7]
gi|7519695|pir||T41992 hypothetical protein U95 - human
herpesvirus 7 (strain JI) gi|1139691|gb|AAC54752.1| HCMV
US22 gene family; similar to MCMV IE2
Length = 940
Score = 32.7 bits (73), Expect = 4.3
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Frame = +1
Query: 250 LSSQRTMEPELYPNCEGRGIVLVQCTK---LE*QNLIYSKFRSLNNQTANNMPINQSNFK 420
+SSQ+T+E LY N G G VL C + Q + ++ ++ T +N I NF
Sbjct: 61 MSSQQTVERNLYANNIGNGNVLSYCRQDSLQGNQGTYFPTYQGFHSNTPHNFSIENFNFG 120
Query: 421 IN 426
N
Sbjct: 121 TN 122
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 523,564,773
Number of Sequences: 1393205
Number of extensions: 10654466
Number of successful extensions: 21840
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 20584
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21821
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 27291941472
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
