Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005454A_C01 KMC005454A_c01
(541 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|O22437|CHLD_PEA Magnesium-chelatase subunit chlD, chloroplast... 96 3e-19
gb|AAD52031.1|AF083555_1 magnesium-chelatase subunit CHLD precur... 93 2e-18
ref|NP_563821.1| Mg-chelatase, putative; protein id: At1g08520.1... 93 2e-18
sp|Q9SJE1|CHLD_ARATH Magnesium-chelatase subunit chlD, chloropla... 93 2e-18
gb|AAL36177.1| putative Mg-chelatase [Arabidopsis thaliana] gi|2... 93 2e-18
>sp|O22437|CHLD_PEA Magnesium-chelatase subunit chlD, chloroplast precursor
(Mg-protoporphyrin IX chelatase) (Mg-chelatase subunit
D) gi|7488839|pir||T06249 protoporphyrin IX magnesium
chelatase (EC 4.99.1.-) D chain - garden pea
gi|2318117|gb|AAB72194.1| Mg-chelatase subunit D [Pisum
sativum]
Length = 754
Score = 95.9 bits (237), Expect = 3e-19
Identities = 48/59 (81%), Positives = 51/59 (86%)
Frame = -2
Query: 225 IIATNYCLVK*VSIIPFRGDSAEVLLPPSRSIAMARKRLERLPCGGGSPLAHGLTTVCR 49
++A +Y VSIIPFRGDSAEVLLPPSRSIAMARKRLERLPCGGGSPLAHGLTT R
Sbjct: 577 LLAESYTSRDQVSIIPFRGDSAEVLLPPSRSIAMARKRLERLPCGGGSPLAHGLTTAVR 635
>gb|AAD52031.1|AF083555_1 magnesium-chelatase subunit CHLD precursor [Arabidopsis thaliana]
Length = 726
Score = 92.8 bits (229), Expect = 2e-18
Identities = 46/59 (77%), Positives = 50/59 (83%)
Frame = -2
Query: 225 IIATNYCLVK*VSIIPFRGDSAEVLLPPSRSIAMARKRLERLPCGGGSPLAHGLTTVCR 49
++A +Y VSIIPFRGD+AEVLLPPSRSIAMAR RLERLPCGGGSPLAHGLTT R
Sbjct: 550 LLAESYTSRDQVSIIPFRGDAAEVLLPPSRSIAMARNRLERLPCGGGSPLAHGLTTAVR 608
>ref|NP_563821.1| Mg-chelatase, putative; protein id: At1g08520.1, supported by cDNA:
gi_16649072 [Arabidopsis thaliana]
gi|16649073|gb|AAL24388.1| similar to
magnesium-chelatase subunit ChlD precursor [Arabidopsis
thaliana] gi|21389627|gb|AAM48012.1| magnesium-chelatase
subunit ChlD-like protein [Arabidopsis thaliana]
Length = 471
Score = 92.8 bits (229), Expect = 2e-18
Identities = 46/59 (77%), Positives = 50/59 (83%)
Frame = -2
Query: 225 IIATNYCLVK*VSIIPFRGDSAEVLLPPSRSIAMARKRLERLPCGGGSPLAHGLTTVCR 49
++A +Y VSIIPFRGD+AEVLLPPSRSIAMAR RLERLPCGGGSPLAHGLTT R
Sbjct: 295 LLAESYTSRDQVSIIPFRGDAAEVLLPPSRSIAMARNRLERLPCGGGSPLAHGLTTAVR 353
>sp|Q9SJE1|CHLD_ARATH Magnesium-chelatase subunit chlD, chloroplast precursor
(Mg-protoporphyrin IX chelatase) (Mg-chelatase subunit
D)
Length = 759
Score = 92.8 bits (229), Expect = 2e-18
Identities = 46/59 (77%), Positives = 50/59 (83%)
Frame = -2
Query: 225 IIATNYCLVK*VSIIPFRGDSAEVLLPPSRSIAMARKRLERLPCGGGSPLAHGLTTVCR 49
++A +Y VSIIPFRGD+AEVLLPPSRSIAMAR RLERLPCGGGSPLAHGLTT R
Sbjct: 583 LLAESYTSRDQVSIIPFRGDAAEVLLPPSRSIAMARNRLERLPCGGGSPLAHGLTTAVR 641
>gb|AAL36177.1| putative Mg-chelatase [Arabidopsis thaliana]
gi|20259647|gb|AAM14341.1| putative Mg-chelatase
[Arabidopsis thaliana]
Length = 760
Score = 92.8 bits (229), Expect = 2e-18
Identities = 46/59 (77%), Positives = 50/59 (83%)
Frame = -2
Query: 225 IIATNYCLVK*VSIIPFRGDSAEVLLPPSRSIAMARKRLERLPCGGGSPLAHGLTTVCR 49
++A +Y VSIIPFRGD+AEVLLPPSRSIAMAR RLERLPCGGGSPLAHGLTT R
Sbjct: 584 LLAESYTSRDQVSIIPFRGDAAEVLLPPSRSIAMARNRLERLPCGGGSPLAHGLTTAVR 642
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 448,650,063
Number of Sequences: 1393205
Number of extensions: 8942277
Number of successful extensions: 21041
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 20582
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21038
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18462123008
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
