Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005453A_C01 KMC005453A_c01
(808 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||E71442 hypothetical protein - Arabidopsis thaliana gi|22450... 145 9e-34
ref|NP_193464.2| G2484-1 protein; protein id: At4g17330.1, suppo... 145 9e-34
emb|CAA10906.1| G2484-1 [Arabidopsis thaliana] 126 3e-28
gb|AAL79800.1|AC079874_23 unknown protein [Oryza sativa] 67 4e-10
ref|NP_493947.1| Fes CIP4 homology domain (108.5 kD) [Caenorhabd... 45 0.002
>pir||E71442 hypothetical protein - Arabidopsis thaliana
gi|2245092|emb|CAB10514.1| hypothetical protein
[Arabidopsis thaliana] gi|7268485|emb|CAB78736.1|
hypothetical protein [Arabidopsis thaliana]
Length = 1732
Score = 145 bits (365), Expect = 9e-34
Identities = 100/293 (34%), Positives = 155/293 (52%), Gaps = 24/293 (8%)
Frame = +1
Query: 1 LQSSGLTRGSVVDYPQPLATLHPYQSPPVRNFLGHNTSWLSQASIRGPWISSPTPAP--- 171
LQSS + RGS + L+ H +Q+PP +N +GHNT W+S R W++S +
Sbjct: 1088 LQSSSVQRGSAATHQPLLSASHAHQTPPTQNIVGHNTPWMSPLPFRNAWLASQQTSGFDV 1147
Query: 172 STHLSASPVFDTIKLGSGKGSSLPPSSSIKNVTPGPPASSAGLQGIFVGTASLLDVINVA 351
+ P+ D +KL K SS+ S + K+V G ++ + + L+ +
Sbjct: 1148 GSRFPVYPITDPVKLTPMKESSMTLSGA-KHVQSGTSSNVSKV-------TPTLEPTSTV 1199
Query: 352 VSPAQHSSDPKPKKRKKGVVSEDLGQKALQSL----------TPAVSNHTSTSFAVLTPL 501
V+PAQHS+ K +KRKK VS + G L SL P + + T
Sbjct: 1200 VAPAQHSTRVKSRKRKKMPVSVESGPNILNSLKQTELAASPLVPFTPTPANLGYNAGTLP 1259
Query: 502 GNVPVTAVEKSIVSVSPLDN------QPENDGNV-----EKRILSDESLMKVKEAKVYAE 648
V +TAV +VS P P GN+ ++ +LS++++ K+KEAK++AE
Sbjct: 1260 SVVSMTAVPMDLVSTFPGKKIKSSFPSPIFGGNLVREVKQRSVLSEDTIEKLKEAKMHAE 1319
Query: 649 EASALSGAAVNHSLELWNQLDKYKNSRSMPDVEAKLASAAVAVAAAAADAKAA 807
+ASAL+ AAV+HS +W Q+++ ++ P+ + +LASAAVA+AAAAA AKAA
Sbjct: 1320 DASALATAAVSHSEYVWKQIEQQSHAGLQPETQDRLASAAVAIAAAAAVAKAA 1372
>ref|NP_193464.2| G2484-1 protein; protein id: At4g17330.1, supported by cDNA:
gi_20466527 [Arabidopsis thaliana]
gi|20466528|gb|AAM20581.1| G2484-1 protein [Arabidopsis
thaliana]
Length = 1058
Score = 145 bits (365), Expect = 9e-34
Identities = 100/293 (34%), Positives = 155/293 (52%), Gaps = 24/293 (8%)
Frame = +1
Query: 1 LQSSGLTRGSVVDYPQPLATLHPYQSPPVRNFLGHNTSWLSQASIRGPWISSPTPAP--- 171
LQSS + RGS + L+ H +Q+PP +N +GHNT W+S R W++S +
Sbjct: 81 LQSSSVQRGSAATHQPLLSASHAHQTPPTQNIVGHNTPWMSPLPFRNAWLASQQTSGFDV 140
Query: 172 STHLSASPVFDTIKLGSGKGSSLPPSSSIKNVTPGPPASSAGLQGIFVGTASLLDVINVA 351
+ P+ D +KL K SS+ S + K+V G ++ + + L+ +
Sbjct: 141 GSRFPVYPITDPVKLTPMKESSMTLSGA-KHVQSGTSSNVSKV-------TPTLEPTSTV 192
Query: 352 VSPAQHSSDPKPKKRKKGVVSEDLGQKALQSL----------TPAVSNHTSTSFAVLTPL 501
V+PAQHS+ K +KRKK VS + G L SL P + + T
Sbjct: 193 VAPAQHSTRVKSRKRKKMPVSVESGPNILNSLKQTELAASPLVPFTPTPANLGYNAGTLP 252
Query: 502 GNVPVTAVEKSIVSVSPLDN------QPENDGNV-----EKRILSDESLMKVKEAKVYAE 648
V +TAV +VS P P GN+ ++ +LS++++ K+KEAK++AE
Sbjct: 253 SVVSMTAVPMDLVSTFPGKKIKSSFPSPIFGGNLVREVKQRSVLSEDTIEKLKEAKMHAE 312
Query: 649 EASALSGAAVNHSLELWNQLDKYKNSRSMPDVEAKLASAAVAVAAAAADAKAA 807
+ASAL+ AAV+HS +W Q+++ ++ P+ + +LASAAVA+AAAAA AKAA
Sbjct: 313 DASALATAAVSHSEYVWKQIEQQSHAGLQPETQDRLASAAVAIAAAAAVAKAA 365
>emb|CAA10906.1| G2484-1 [Arabidopsis thaliana]
Length = 954
Score = 126 bits (317), Expect = 3e-28
Identities = 89/269 (33%), Positives = 140/269 (51%), Gaps = 24/269 (8%)
Frame = +1
Query: 73 QSPPVRNFLGHNTSWLSQASIRGPWISSPTPAP---STHLSASPVFDTIKLGSGKGSSLP 243
Q+PP +N +GHNT W+S R W++S + + P+ D +KL K SS+
Sbjct: 1 QTPPTQNIVGHNTPWMSPLPFRNAWLASQQTSGFDVGSRFPVYPITDPVKLTPMKESSMT 60
Query: 244 PSSSIKNVTPGPPASSAGLQGIFVGTASLLDVINVAVSPAQHSSDPKPKKRKKGVVSEDL 423
S + K+V G ++ + + L+ + V+PAQHS+ K +KRKK VS +
Sbjct: 61 LSGA-KHVQSGTSSNVSKV-------TPTLEPTSTVVAPAQHSTRVKSRKRKKMPVSVES 112
Query: 424 GQKALQSL----------TPAVSNHTSTSFAVLTPLGNVPVTAVEKSIVSVSPLDN---- 561
G L SL P + + T V +TAV +VS P
Sbjct: 113 GPNILNSLKQTELAASPLVPFTPTPANLGYNAGTLPSVVSMTAVPMDLVSTFPGKKIKSS 172
Query: 562 --QPENDGNV-----EKRILSDESLMKVKEAKVYAEEASALSGAAVNHSLELWNQLDKYK 720
P GN+ ++ +LS++++ K+KEAK++AE+ASAL+ AAV+HS +W Q+++
Sbjct: 173 FPSPIFGGNLVREVKQRSVLSEDTIEKLKEAKMHAEDASALATAAVSHSEYVWKQIEQQS 232
Query: 721 NSRSMPDVEAKLASAAVAVAAAAADAKAA 807
++ P+ + +L SAAVA+A AAA AKAA
Sbjct: 233 HAGLQPETQDRLGSAAVAIAGAAAVAKAA 261
>gb|AAL79800.1|AC079874_23 unknown protein [Oryza sativa]
Length = 2036
Score = 66.6 bits (161), Expect = 4e-10
Identities = 76/286 (26%), Positives = 125/286 (43%), Gaps = 22/286 (7%)
Frame = +1
Query: 16 LTRGSVVDYPQPLATLHPYQSPPVRNFLGHNTSWLSQA--SIRGPWISSP-------TPA 168
L RG+ +D+ Q ++ + PY S R SW Q+ PW+ P +
Sbjct: 1065 LPRGTHLDFGQAVSPVFPYSSQ-TRQPTSGVASWFPQSPGGRAAPWLVQPQNLIFDSSMK 1123
Query: 169 PSTHLSASPVFDTIKLGSGKGSSLPPSSSIKNVTPGPPASSAGLQGIFVGTASLLDVI-- 342
P SA+ +T K S K S+ + S P S T S L VI
Sbjct: 1124 PPVPASAN---ETAKGASSKNISISQAVSPVAFPPNQAPS----------TISPLAVIPE 1170
Query: 343 ---NVAVSPAQHSSDP-KPKKRKKGVVSED------LGQKALQSLTPAVSNHTSTSFAVL 492
+VS ++ + P K +KRKK S + L + + S+TPA + + +
Sbjct: 1171 EKQKASVSTSKRGATPQKSRKRKKAPASPEQPIIAPLLKTDIASVTPATQHTPGFTLSTH 1230
Query: 493 TPLGNVPVTAVEKSIVSVSPLDN-QPENDGNVEKRILSDESLMKVKEAKVYAEEASALSG 669
+P N+ + + + V+P+ N Q + E+RI S++ ++++ A+ A +
Sbjct: 1231 SP-SNILASGLVSNTGLVTPVPNYQITGIKDAEQRIFSEQISGAIEQSMGQAKGAGVHAM 1289
Query: 670 AAVNHSLELWNQLDKYKNSRSMPDVEAKLASAAVAVAAAAADAKAA 807
AV H+ +W+ L + +VE KL SAA A +AA + AKAA
Sbjct: 1290 DAVRHAEGIWSHLSTNSKGKLPAEVEEKLTSAAAAASAAVSVAKAA 1335
>ref|NP_493947.1| Fes CIP4 homology domain (108.5 kD) [Caenorhabditis elegans]
gi|5701573|gb|AAD47126.1| Hypothetical protein F56D12.6a
[Caenorhabditis elegans]
Length = 968
Score = 44.7 bits (104), Expect = 0.002
Identities = 48/186 (25%), Positives = 81/186 (42%), Gaps = 10/186 (5%)
Frame = +1
Query: 163 PAPSTHLSASPVFDTIKLGSGKG--SSLPPSSSIKNVTPGPPASSAGL-------QGIFV 315
PA S+ ++ +PV D + + SG SS S +++ P P ++ L +GI V
Sbjct: 281 PASSSSMNLNPVRDLVDIMSGNSMPSSCSSSGILQDQAPPPHPTTVDLLMMDPIGEGIPV 340
Query: 316 GTASLLDVINVAVSPAQHSSDPKPKKRKKGVVSEDLGQKALQSLTPAVSNHT-STSFAVL 492
+S+ N + P ++S P+ K+ +SE G K L P T STS
Sbjct: 341 VDSSINS--NYSTPPIINNSIPESIKKSSEDLSEKKGGKKLSMFIPKRRTKTVSTSSIDE 398
Query: 493 TPLGNVPVTAVEKSIVSVSPLDNQPENDGNVEKRILSDESLMKVKEAKVYAEEASALSGA 672
TP P +A + ++ EN+ N+ + D++ +K + L+G+
Sbjct: 399 TPTTAEPFSASGLFKFTREKRRSKKENEANLRASVCMDDTHSTASSSK---SDDKMLNGS 455
Query: 673 AVNHSL 690
A HSL
Sbjct: 456 APAHSL 461
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.307 0.124 0.343
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 723,139,091
Number of Sequences: 1393205
Number of extensions: 17178237
Number of successful extensions: 52537
Number of sequences better than 10.0: 137
Number of HSP's better than 10.0 without gapping: 47261
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51870
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 41176381974
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
