Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005452A_C01 KMC005452A_c01
(634 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_566029.1| F-box protein family, AtFBX5; protein id: At2g4... 104 1e-21
gb|AAG60190.1|AC084763_10 putative arm repeat protein [Oryza sat... 94 1e-18
ref|NP_191594.1| Armadillo repeat containing F-box protein; prot... 92 7e-18
pir||I39171 cyclin A/CDK2-associated p45 - human gi|995826|gb|AA... 47 2e-04
ref|NP_005974.2| S-phase kinase-associated protein 2, isoform 1;... 47 2e-04
>ref|NP_566029.1| F-box protein family, AtFBX5; protein id: At2g44900.1 [Arabidopsis
thaliana] gi|7486948|pir||T00403 hypothetical protein
At2g44900 [imported] - Arabidopsis thaliana
gi|2344894|gb|AAC31834.1| F-box protein family, AtFBX5
[Arabidopsis thaliana]
Length = 930
Score = 104 bits (259), Expect = 1e-21
Identities = 52/100 (52%), Positives = 67/100 (67%), Gaps = 8/100 (8%)
Frame = +1
Query: 358 MSRRVRRKVAKKGKGNEVVSIPEIQGEVLDLESQ--------GIVEWRGLPDDTVIQLLS 513
MSRRVRRK+ ++ ++VV +P + E G V+W LP DTV+QL +
Sbjct: 1 MSRRVRRKLEEEKGKDKVVVLPSYPETSISNEEDLVAPELLHGFVDWISLPYDTVLQLFT 60
Query: 514 CLSYRDRASFSSSCRTWRSLGSSPCLWTSLDLRSHKFDPS 633
CL+YRDRAS +S+C+TWR LG+S CLWTSLDLR HKFD S
Sbjct: 61 CLNYRDRASLASTCKTWRCLGASSCLWTSLDLRPHKFDAS 100
>gb|AAG60190.1|AC084763_10 putative arm repeat protein [Oryza sativa]
Length = 751
Score = 94.0 bits (232), Expect = 1e-18
Identities = 50/112 (44%), Positives = 72/112 (63%), Gaps = 22/112 (19%)
Frame = +1
Query: 358 MSRRVRRKVAKKG-KGNEVVSIPEIQ------------GEVLDLESQG---------IVE 471
M+RRVRR++ K G KG +V + E + G + + ++G +V+
Sbjct: 1 MTRRVRRRLCKDGGKGKDVAADEERELVSCSSSSRRRGGLGVAVAARGGGGGGSGSCVVD 60
Query: 472 WRGLPDDTVIQLLSCLSYRDRASFSSSCRTWRSLGSSPCLWTSLDLRSHKFD 627
WR LPDDTV+QL L+YRDRAS +++CRTWR LG+SPCLW++LDLR+H+ D
Sbjct: 61 WRTLPDDTVLQLFGRLNYRDRASMAAACRTWRDLGASPCLWSALDLRAHRCD 112
>ref|NP_191594.1| Armadillo repeat containing F-box protein; protein id: At3g60350.1
[Arabidopsis thaliana] gi|11357176|pir||T47846 Arm
repeat containing protein-like - Arabidopsis thaliana
gi|7287983|emb|CAB81821.1| Arm repeat containing
protein-like [Arabidopsis thaliana]
Length = 928
Score = 91.7 bits (226), Expect = 7e-18
Identities = 51/93 (54%), Positives = 62/93 (65%), Gaps = 1/93 (1%)
Frame = +1
Query: 358 MSRRVRRKVAKKGKGN-EVVSIPEIQGEVLDLESQGIVEWRGLPDDTVIQLLSCLSYRDR 534
MSRRVR++V GK + S I E L + Q V W LP DTV L + L+YRDR
Sbjct: 1 MSRRVRQRVEDNGKYKVDSPSYTVIGVEDLAPKVQQYVNWTSLPYDTVFHLFTRLNYRDR 60
Query: 535 ASFSSSCRTWRSLGSSPCLWTSLDLRSHKFDPS 633
AS +S+CRTWRSLG+S LW+SLDLR+HKFD S
Sbjct: 61 ASLASTCRTWRSLGASSFLWSSLDLRAHKFDLS 93
>pir||I39171 cyclin A/CDK2-associated p45 - human gi|995826|gb|AAC50242.1|
cyclin A/CDK2-associated p45
Length = 435
Score = 47.4 bits (111), Expect = 2e-04
Identities = 25/86 (29%), Positives = 40/86 (46%)
Frame = +1
Query: 373 RRKVAKKGKGNEVVSIPEIQGEVLDLESQGIVEWRGLPDDTVIQLLSCLSYRDRASFSSS 552
R+++ KG + V + + L+ E+ V W LPD+ ++ + SCL + S
Sbjct: 79 RKRLKSKGSDKDFVIVRRPK---LNRENFPGVSWDSLPDELLLGIFSCLCLPELLKVSGV 135
Query: 553 CRTWRSLGSSPCLWTSLDLRSHKFDP 630
C+ W L S LW +LDL P
Sbjct: 136 CKRWYRLASDESLWQTLDLTGKNLHP 161
>ref|NP_005974.2| S-phase kinase-associated protein 2, isoform 1; cyclin
A/CDK2-associated p45; F-box protein Skp2 [Homo sapiens]
gi|19909962|dbj|BAB87200.1| SKP2-like protein type alpha
[Homo sapiens] gi|21260543|gb|AAK31593.1| F-box protein
SKP2 [Homo sapiens]
Length = 424
Score = 47.4 bits (111), Expect = 2e-04
Identities = 25/86 (29%), Positives = 40/86 (46%)
Frame = +1
Query: 373 RRKVAKKGKGNEVVSIPEIQGEVLDLESQGIVEWRGLPDDTVIQLLSCLSYRDRASFSSS 552
R+++ KG + V + + L+ E+ V W LPD+ ++ + SCL + S
Sbjct: 67 RKRLKSKGSDKDFVIVRRPK---LNRENFPGVSWDSLPDELLLGIFSCLCLPELLKVSGV 123
Query: 553 CRTWRSLGSSPCLWTSLDLRSHKFDP 630
C+ W L S LW +LDL P
Sbjct: 124 CKRWYRLASDESLWQTLDLTGKNLHP 149
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 603,262,943
Number of Sequences: 1393205
Number of extensions: 14051114
Number of successful extensions: 41371
Number of sequences better than 10.0: 96
Number of HSP's better than 10.0 without gapping: 39104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41319
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 26154777244
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
