Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005449A_C01 KMC005449A_c01
(600 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_195974.2| putative protein; protein id: At5g03540.1, supp... 148 5e-35
ref|NP_200047.1| putative protein; protein id: At5g52340.1 [Arab... 139 3e-32
ref|NP_200048.1| putative protein; protein id: At5g52350.1 [Arab... 123 2e-27
gb|AAL07238.2| unknown protein [Arabidopsis thaliana] 98 7e-20
ref|NP_566477.1| Expressed protein; protein id: At3g14090.1, sup... 98 7e-20
>ref|NP_195974.2| putative protein; protein id: At5g03540.1, supported by cDNA:
gi_18176063 [Arabidopsis thaliana]
gi|11278981|pir||T48380 hypothetical protein F12E4.320 -
Arabidopsis thaliana gi|7378639|emb|CAB83315.1| putative
protein [Arabidopsis thaliana]
gi|18176064|gb|AAL59977.1| unknown protein [Arabidopsis
thaliana] gi|22136732|gb|AAM91685.1| unknown protein
[Arabidopsis thaliana]
Length = 638
Score = 148 bits (374), Expect = 5e-35
Identities = 69/86 (80%), Positives = 81/86 (93%)
Frame = -3
Query: 595 KQFNVMFEELHQKQSQWTVPDSELRESLRLAVAEVLLPAYRSFVKRFGALVETGKNPQKY 416
K FN+ F+ELHQ+QSQWTVPD+ELRESLRLAVAEVLLPAYRSF+KRFG LVE+GKNPQKY
Sbjct: 553 KMFNMQFDELHQRQSQWTVPDTELRESLRLAVAEVLLPAYRSFLKRFGPLVESGKNPQKY 612
Query: 415 IKYTADDLDRMLGEFFEGKNMSETKR 338
IKYTA+DL+R+LGE FEGK+M+E +R
Sbjct: 613 IKYTAEDLERLLGELFEGKSMNEPRR 638
>ref|NP_200047.1| putative protein; protein id: At5g52340.1 [Arabidopsis thaliana]
gi|10177400|dbj|BAB10531.1|
emb|CAB83315.1~gene_id:K24M7.7~strong similarity to
unknown protein [Arabidopsis thaliana]
Length = 608
Score = 139 bits (350), Expect = 3e-32
Identities = 65/86 (75%), Positives = 76/86 (87%)
Frame = -3
Query: 595 KQFNVMFEELHQKQSQWTVPDSELRESLRLAVAEVLLPAYRSFVKRFGALVETGKNPQKY 416
K FN FEELHQ+Q QWTVPDSELRESLRLAVAEVLLPA+RSF+KRFG ++E+GKNPQKY
Sbjct: 523 KTFNSQFEELHQRQCQWTVPDSELRESLRLAVAEVLLPAFRSFLKRFGPMIESGKNPQKY 582
Query: 415 IKYTADDLDRMLGEFFEGKNMSETKR 338
I+++ +DL+RML EFFEGK SE KR
Sbjct: 583 IRFSPEDLERMLNEFFEGKTWSEPKR 608
>ref|NP_200048.1| putative protein; protein id: At5g52350.1 [Arabidopsis thaliana]
gi|10177401|dbj|BAB10532.1|
emb|CAB83315.1~gene_id:K24M7.8~strong similarity to
unknown protein [Arabidopsis thaliana]
Length = 547
Score = 123 bits (309), Expect = 2e-27
Identities = 56/81 (69%), Positives = 70/81 (86%)
Frame = -3
Query: 595 KQFNVMFEELHQKQSQWTVPDSELRESLRLAVAEVLLPAYRSFVKRFGALVETGKNPQKY 416
K FN FEELHQ+Q QW+V D ELRESLRLA+AEVLLPAY SF+KRFG ++E+GKN QKY
Sbjct: 461 KTFNSQFEELHQRQCQWSVSDVELRESLRLAIAEVLLPAYGSFLKRFGPMIESGKNSQKY 520
Query: 415 IKYTADDLDRMLGEFFEGKNM 353
I++T +DL+RML +FF+GKN+
Sbjct: 521 IRFTPEDLERMLNDFFQGKNL 541
>gb|AAL07238.2| unknown protein [Arabidopsis thaliana]
Length = 503
Score = 98.2 bits (243), Expect = 7e-20
Identities = 40/78 (51%), Positives = 64/78 (81%)
Frame = -3
Query: 595 KQFNVMFEELHQKQSQWTVPDSELRESLRLAVAEVLLPAYRSFVKRFGALVETGKNPQKY 416
K FN MFEE+H+ QS W+VPD++LRE LR++++E L+PAYRSF+ RF +E+G++P+ Y
Sbjct: 416 KAFNTMFEEVHRTQSTWSVPDAQLREELRISLSEHLIPAYRSFLGRFRGHIESGRHPENY 475
Query: 415 IKYTADDLDRMLGEFFEG 362
+KY+ +D++ ++ +FFEG
Sbjct: 476 LKYSVEDIETIVLDFFEG 493
>ref|NP_566477.1| Expressed protein; protein id: At3g14090.1, supported by cDNA:
gi_15810240 [Arabidopsis thaliana]
Length = 451
Score = 98.2 bits (243), Expect = 7e-20
Identities = 40/78 (51%), Positives = 64/78 (81%)
Frame = -3
Query: 595 KQFNVMFEELHQKQSQWTVPDSELRESLRLAVAEVLLPAYRSFVKRFGALVETGKNPQKY 416
K FN MFEE+H+ QS W+VPD++LRE LR++++E L+PAYRSF+ RF +E+G++P+ Y
Sbjct: 364 KAFNTMFEEVHRTQSTWSVPDAQLREELRISLSEHLIPAYRSFLGRFRGHIESGRHPENY 423
Query: 415 IKYTADDLDRMLGEFFEG 362
+KY+ +D++ ++ +FFEG
Sbjct: 424 LKYSVEDIETIVLDFFEG 441
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 490,594,369
Number of Sequences: 1393205
Number of extensions: 10166046
Number of successful extensions: 23041
Number of sequences better than 10.0: 63
Number of HSP's better than 10.0 without gapping: 22264
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23022
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23426109484
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
