Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005446A_C01 KMC005446A_c01
(538 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_059397.1| NADH dehydrogenase subunit 5 [Paramecium aureli... 33 2.2
ref|NP_701628.1| hypothetical protein [Plasmodium falciparum 3D7... 32 3.7
gb|AAL54912.2|AF170083_1 putative transcriptional repressor [Can... 32 3.7
gb|AAM45317.2| similar to Required for the transfer of mannosylp... 32 3.7
gb|ZP_00003084.1| hypothetical protein [Nitrosomonas europaea] 32 4.8
>ref|NP_059397.1| NADH dehydrogenase subunit 5 [Paramecium aurelia]
gi|128794|sp|P15584|NU5M_PARTE NADH-UBIQUINONE
OXIDOREDUCTASE CHAIN 5 gi|84292|pir||S07744 NADH2
dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 -
Paramecium tetraurelia mitochondrion
gi|13276|emb|CAA34053.1| ND5 protein (AA 1-570)
[Paramecium aurelia]
Length = 570
Score = 33.1 bits (74), Expect = 2.2
Identities = 29/105 (27%), Positives = 51/105 (47%), Gaps = 1/105 (0%)
Frame = -2
Query: 363 LKVWAFPFFLYSGRISFARVQHLLNSQAFQCCYGYL*GWLAIGL-GFYLVLLTFWFLMGF 187
+ ++ + +F Y IS R+ L+N+ G L + G+ L+ +T +FL+ F
Sbjct: 97 VNLYTYSYFRYEPHIS--RLISLINAFIASMIILVNSGNLVVFFFGWELIGITSFFLINF 154
Query: 186 FFLEGLFLKLSLKV**FNKNCVEVYVGNSILIAFLLCHVYVHDLN 52
+ K + K FNK + +++LIA +L + VHDLN
Sbjct: 155 WGERAPTFKSAFKAFSFNK-----FSDSAVLIALILIYANVHDLN 194
>ref|NP_701628.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23496798|gb|AAN36352.1|AE014848_28 hypothetical
protein [Plasmodium falciparum 3D7]
Length = 2281
Score = 32.3 bits (72), Expect = 3.7
Identities = 20/67 (29%), Positives = 37/67 (54%), Gaps = 7/67 (10%)
Frame = +3
Query: 186 KNPSKTKK*EAPNKNPNQ*QATPTNNHSS------TGKLEN*EDVEPEQMKSGRYTGK-T 344
++PS +KK + NKN N T NN+ + + K E ++++ + +Y+GK T
Sbjct: 1913 QDPSYSKKSKNKNKNKNNYNMTNNNNYENPTIVKKSNKEETKKNIKKNEHVKNKYSGKNT 1972
Query: 345 EKPTPSI 365
+K +P+I
Sbjct: 1973 QKCSPAI 1979
>gb|AAL54912.2|AF170083_1 putative transcriptional repressor [Candida albicans]
Length = 1085
Score = 32.3 bits (72), Expect = 3.7
Identities = 19/56 (33%), Positives = 30/56 (52%)
Frame = +1
Query: 163 EKQPFKEEKTHQKPKSKKHQIKTQTNSKPPLQITIAALESLRIEKMLNPSK*NPAA 330
EK P +E+ HQ P +HQ ++Q+ +PP Q +S ++ + L P NP A
Sbjct: 618 EKPPTQEQPHHQPPPPPQHQQQSQSQPQPPHQPQHTQNQSPQLAQ-LPPHHSNPPA 672
>gb|AAM45317.2| similar to Required for the transfer of mannosylphosphate to cell
wall mannans.; Mnn4p [Saccharomyces cerevisiae]
[Dictyostelium discoideum]
Length = 393
Score = 32.3 bits (72), Expect = 3.7
Identities = 24/102 (23%), Positives = 45/102 (43%)
Frame = +1
Query: 133 IKLSHF*GKLEKQPFKEEKTHQKPKSKKHQIKTQTNSKPPLQITIAALESLRIEKMLNPS 312
IK K E+Q K E+ + + ++ + T T K + ++ ++
Sbjct: 221 IKKQKVSNKTEEQKEKVEEEEKVEEEEQSETTTTTQKKKKFISNDSTIDIMKQISEEQEK 280
Query: 313 K*NPAAIQEKRKSPHLQSKDIRTAEANQQKLDKNTKSIYTRL 438
K N QEK+K+ LQSK++ + ++K K+I +L
Sbjct: 281 KANQKITQEKKKTQQLQSKEVEKQTKKKNVVEKK-KTILKKL 321
>gb|ZP_00003084.1| hypothetical protein [Nitrosomonas europaea]
Length = 413
Score = 32.0 bits (71), Expect = 4.8
Identities = 14/37 (37%), Positives = 23/37 (61%)
Frame = +1
Query: 352 PHLQSKDIRTAEANQQKLDKNTKSIYTRLPYHTYLLN 462
PHL+ +DIRTAEA + DK+ K + ++ ++N
Sbjct: 135 PHLRDRDIRTAEAGESMEDKSRKLVEGIRDHYAEVIN 171
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 447,855,086
Number of Sequences: 1393205
Number of extensions: 9833117
Number of successful extensions: 30313
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 28829
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30244
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18173652336
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
