Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005445A_C01 KMC005445A_c01
(552 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9YGP6|SLB2_XENLA Oocyte-specific histone RNA stem-loop bindi... 33 1.8
ref|NP_705574.1| hypothetical protein [Plasmodium falciparum 3D7... 32 3.9
ref|NP_588078.1| hypothetical protein [Schizosaccharomyces pombe... 32 3.9
ref|NP_701748.1| hypothetical protein [Plasmodium falciparum 3D7... 32 5.1
ref|NP_703525.1| hypothetical protein [Plasmodium falciparum 3D7... 31 8.7
>sp|Q9YGP6|SLB2_XENLA Oocyte-specific histone RNA stem-loop binding protein 2
gi|4324619|gb|AAD16961.1| oocyte-specific histone mRNA
stem-loop binding protein [Xenopus laevis]
Length = 250
Score = 33.5 bits (75), Expect = 1.8
Identities = 14/26 (53%), Positives = 18/26 (68%)
Frame = -3
Query: 184 LDTWATESSGLSNNKMAWLGMQLCSL 107
L++W ES+ L N M WLG+QL SL
Sbjct: 191 LESWLQESNSLQNPDMDWLGLQLSSL 216
>ref|NP_705574.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23615819|emb|CAD52811.1| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 2170
Score = 32.3 bits (72), Expect = 3.9
Identities = 19/55 (34%), Positives = 31/55 (55%), Gaps = 1/55 (1%)
Frame = -1
Query: 486 NNCSLINITKEDIIYTRDSELFEDTLKCFREISVEIIQSE-LNSNQIFQIS*EED 325
NNC++IN + ELF DT+ C + S Q++ ++ NQI++I EE+
Sbjct: 1540 NNCTIIN---------NEKELFNDTIHCVYDPSGVTSQNDNIDMNQIYRIQNEEN 1585
>ref|NP_588078.1| hypothetical protein [Schizosaccharomyces pombe]
gi|11359172|pir||T50436 hypothetical protein SPCC4B3.12
[imported] - fission yeast (Schizosaccharomyces pombe)
gi|6434020|emb|CAB60686.1| hypothetical protein
[Schizosaccharomyces pombe]
Length = 441
Score = 32.3 bits (72), Expect = 3.9
Identities = 16/43 (37%), Positives = 24/43 (55%)
Frame = -1
Query: 519 RKIIQRQTERPNNCSLINITKEDIIYTRDSELFEDTLKCFREI 391
RK++ R ER +CS+INI + II D + + FRE+
Sbjct: 36 RKLVDRSIERMESCSIINIITKYIIEQTDLDQAAKNILQFREL 78
>ref|NP_701748.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23496920|gb|AAN36472.1|AE014850_37 hypothetical
protein [Plasmodium falciparum 3D7]
Length = 5767
Score = 32.0 bits (71), Expect = 5.1
Identities = 18/81 (22%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Frame = -1
Query: 552 SNIKCVRWAYSRKIIQRQTERPNNCSLINITKEDIIYTRDSELFEDTLKCFREISVEIIQ 373
+N+ ++ +++ KI++++ N LIN E+II + ++ + E+ ++ +
Sbjct: 3574 NNLNEIKKSFNEKILEKENIIEKNNDLINNLNEEIIMLKSIKIKNNNFIKELELQIKNLN 3633
Query: 372 SELNS-NQIFQIS*EEDMLVN 313
+E+N+ N + + S EE ++N
Sbjct: 3634 NEINTLNDMLKDSEEEIRMLN 3654
>ref|NP_703525.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23504667|emb|CAD51545.1| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 1379
Score = 31.2 bits (69), Expect = 8.7
Identities = 19/74 (25%), Positives = 31/74 (41%)
Frame = -1
Query: 525 YSRKIIQRQTERPNNCSLINITKEDIIYTRDSELFEDTLKCFREISVEIIQSELNSNQIF 346
Y K + + N+ + IN K I+Y +D++ C + + N+N IF
Sbjct: 891 YKSKTVVQYNHHQNDNNKINFKKNVILYQKDNDGIYHLYGCANNCDISSSSNNNNNNNIF 950
Query: 345 QIS*EEDMLVNFFI 304
EED +N I
Sbjct: 951 Y---EEDKHININI 961
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 420,589,217
Number of Sequences: 1393205
Number of extensions: 8084600
Number of successful extensions: 16534
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 16148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16525
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19234190289
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
