Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005444A_C01 KMC005444A_c01
(618 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T07612 cellulase (EC 3.2.1.4) Cel3, membrane-anchored - tom... 147 8e-35
dbj|BAC22690.1| endo-1,4-beta-D-glucanase [Pyrus communis] 146 2e-34
gb|AAN72232.1| At5g49720/K2I5_8 [Arabidopsis thaliana] 134 9e-31
ref|NP_199783.1| glycosyl hydrolase family 9 (endo-1,4-beta-gluc... 134 9e-31
gb|AAK59818.1| AT5g49720/K2I5_8 [Arabidopsis thaliana] 134 9e-31
>pir||T07612 cellulase (EC 3.2.1.4) Cel3, membrane-anchored - tomato
gi|2065531|gb|AAC49704.1| endo-1,4-beta-glucanase
[Lycopersicon esculentum]
Length = 617
Score = 147 bits (372), Expect = 8e-35
Identities = 67/74 (90%), Positives = 70/74 (94%)
Frame = -2
Query: 617 VGAMVAGPDKHDGFHDVRMNYNYTEPTIAGNAGLVAALVALSGDKSIPIDKNTLFSAVPP 438
VGAMVAGPDKHDGF DVR NYNYTEPT+AGNAGLVAALVALSGD+ + IDKNTLFSAVPP
Sbjct: 544 VGAMVAGPDKHDGFRDVRSNYNYTEPTLAGNAGLVAALVALSGDRDVGIDKNTLFSAVPP 603
Query: 437 MFPTPPPPPAPWKP 396
MFPTPPPPPAPWKP
Sbjct: 604 MFPTPPPPPAPWKP 617
>dbj|BAC22690.1| endo-1,4-beta-D-glucanase [Pyrus communis]
Length = 621
Score = 146 bits (369), Expect = 2e-34
Identities = 66/73 (90%), Positives = 70/73 (95%)
Frame = -2
Query: 614 GAMVAGPDKHDGFHDVRMNYNYTEPTIAGNAGLVAALVALSGDKSIPIDKNTLFSAVPPM 435
GAMVAGPDKHDGF DVR NYNYTEPT+AGNAGLVAALVALSG+KS+ IDKNT+FSAVPPM
Sbjct: 549 GAMVAGPDKHDGFRDVRSNYNYTEPTLAGNAGLVAALVALSGEKSVGIDKNTIFSAVPPM 608
Query: 434 FPTPPPPPAPWKP 396
FPTPPPPPAPWKP
Sbjct: 609 FPTPPPPPAPWKP 621
>gb|AAN72232.1| At5g49720/K2I5_8 [Arabidopsis thaliana]
Length = 621
Score = 134 bits (337), Expect = 9e-31
Identities = 62/75 (82%), Positives = 68/75 (90%), Gaps = 2/75 (2%)
Frame = -2
Query: 614 GAMVAGPDKHDGFHDVRMNYNYTEPTIAGNAGLVAALVALSGDKSI--PIDKNTLFSAVP 441
GAMVAGPDK DG+ DVRMNYNYTEPT+AGNAGLVAALVALSG++ IDKNT+FSAVP
Sbjct: 547 GAMVAGPDKRDGYRDVRMNYNYTEPTLAGNAGLVAALVALSGEEEATGKIDKNTIFSAVP 606
Query: 440 PMFPTPPPPPAPWKP 396
P+FPTPPPPPAPWKP
Sbjct: 607 PLFPTPPPPPAPWKP 621
>ref|NP_199783.1| glycosyl hydrolase family 9 (endo-1,4-beta-glucanase); protein id:
At5g49720.1, supported by cDNA: 21922., supported by
cDNA: gi_1022806, supported by cDNA: gi_14335077,
supported by cDNA: gi_3598955 [Arabidopsis thaliana]
gi|2129559|pir||S71215 cellulase (EC 3.2.1.4) KOR,
membrane-anchored [validated] - Arabidopsis thaliana
gi|1022807|gb|AAB60304.1| cellulase [Arabidopsis
thaliana] gi|3493633|gb|AAC33467.1| cellulase
[Arabidopsis thaliana] gi|3598956|gb|AAC35344.1|
cellulase [Arabidopsis thaliana]
gi|3978258|gb|AAC83240.1| endo-1,4-beta-D-glucanase
KORRIGAN [Arabidopsis thaliana]
gi|8978269|dbj|BAA98160.1| cellulase homolog OR16pep
precursor [Arabidopsis thaliana]
Length = 621
Score = 134 bits (337), Expect = 9e-31
Identities = 62/75 (82%), Positives = 68/75 (90%), Gaps = 2/75 (2%)
Frame = -2
Query: 614 GAMVAGPDKHDGFHDVRMNYNYTEPTIAGNAGLVAALVALSGDKSI--PIDKNTLFSAVP 441
GAMVAGPDK DG+ DVRMNYNYTEPT+AGNAGLVAALVALSG++ IDKNT+FSAVP
Sbjct: 547 GAMVAGPDKRDGYRDVRMNYNYTEPTLAGNAGLVAALVALSGEEEATGKIDKNTIFSAVP 606
Query: 440 PMFPTPPPPPAPWKP 396
P+FPTPPPPPAPWKP
Sbjct: 607 PLFPTPPPPPAPWKP 621
>gb|AAK59818.1| AT5g49720/K2I5_8 [Arabidopsis thaliana]
Length = 621
Score = 134 bits (337), Expect = 9e-31
Identities = 62/75 (82%), Positives = 68/75 (90%), Gaps = 2/75 (2%)
Frame = -2
Query: 614 GAMVAGPDKHDGFHDVRMNYNYTEPTIAGNAGLVAALVALSGDKSI--PIDKNTLFSAVP 441
GAMVAGPDK DG+ DVRMNYNYTEPT+AGNAGLVAALVALSG++ IDKNT+FSAVP
Sbjct: 547 GAMVAGPDKRDGYRDVRMNYNYTEPTLAGNAGLVAALVALSGEEEATGKIDKNTIFSAVP 606
Query: 440 PMFPTPPPPPAPWKP 396
P+FPTPPPPPAPWKP
Sbjct: 607 PLFPTPPPPPAPWKP 621
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 533,396,529
Number of Sequences: 1393205
Number of extensions: 12292099
Number of successful extensions: 114939
Number of sequences better than 10.0: 214
Number of HSP's better than 10.0 without gapping: 58308
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97562
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 24733321959
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
