Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005443A_C01 KMC005443A_c01
(634 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||S71477 homeotic protein, ovule-specific - Phalaenopsis sp g... 39 0.057
ref|NP_172015.1| homeodomain protein; protein id: At1g05230.1, s... 39 0.074
pir||G86186 hypothetical protein [imported] - Arabidopsis thalia... 39 0.074
emb|CAB96425.1| OCL5 protein [Zea mays] 37 0.28
gb|AAL73523.1|AF466200_2 OCL5 protein [Sorghum bicolor] 36 0.37
>pir||S71477 homeotic protein, ovule-specific - Phalaenopsis sp
gi|1173622|gb|AAB37230.1| homeobox protein
Length = 768
Score = 38.9 bits (89), Expect = 0.057
Identities = 18/22 (81%), Positives = 21/22 (94%)
Frame = -3
Query: 632 VATVNNLIACTVERIKASLIGE 567
VATVN+LIACTVERIKA++ GE
Sbjct: 744 VATVNSLIACTVERIKAAVTGE 765
>ref|NP_172015.1| homeodomain protein; protein id: At1g05230.1, supported by cDNA:
gi_14334995, supported by cDNA: gi_20147144 [Arabidopsis
thaliana] gi|14334996|gb|AAK59762.1|
At1g05230/YUP8H12_16 [Arabidopsis thaliana]
gi|20147145|gb|AAM10289.1| At1g05230/YUP8H12_16
[Arabidopsis thaliana]
Length = 721
Score = 38.5 bits (88), Expect = 0.074
Identities = 18/19 (94%), Positives = 19/19 (99%)
Frame = -3
Query: 632 VATVNNLIACTVERIKASL 576
VATVNNLIACTVERIKAS+
Sbjct: 698 VATVNNLIACTVERIKASM 716
>pir||G86186 hypothetical protein [imported] - Arabidopsis thaliana
gi|2388574|gb|AAB71455.1| Strong similarity to
Phalaenopsis homeobox protein (gb|U34743). [Arabidopsis
thaliana]
Length = 749
Score = 38.5 bits (88), Expect = 0.074
Identities = 18/19 (94%), Positives = 19/19 (99%)
Frame = -3
Query: 632 VATVNNLIACTVERIKASL 576
VATVNNLIACTVERIKAS+
Sbjct: 726 VATVNNLIACTVERIKASM 744
>emb|CAB96425.1| OCL5 protein [Zea mays]
Length = 795
Score = 36.6 bits (83), Expect = 0.28
Identities = 17/22 (77%), Positives = 20/22 (90%)
Frame = -3
Query: 632 VATVNNLIACTVERIKASLIGE 567
VATVN+LIACTVERIKA++ E
Sbjct: 769 VATVNSLIACTVERIKAAVCAE 790
>gb|AAL73523.1|AF466200_2 OCL5 protein [Sorghum bicolor]
Length = 803
Score = 36.2 bits (82), Expect = 0.37
Identities = 16/24 (66%), Positives = 21/24 (86%)
Frame = -3
Query: 632 VATVNNLIACTVERIKASLIGEGL 561
VATVN+LIACTVERIKA++ + +
Sbjct: 772 VATVNSLIACTVERIKAAVAADNI 795
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 458,188,159
Number of Sequences: 1393205
Number of extensions: 8923728
Number of successful extensions: 14536
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 14330
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14531
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 26154777244
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
