Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005442A_C02 KMC005442A_c02
(575 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_188447.1| chaperonin subunit, putative; protein id: At3g1... 142 2e-33
gb|AAM66101.1| chaperonin subunit, putative [Arabidopsis thaliana] 142 2e-33
emb|CAA09989.1| cytosolic chaperonin, delta-subunit [Glycine max] 141 7e-33
gb|AAG13521.1|AC068924_26 putative cytosolic chaperonin, delta-s... 130 1e-29
gb|AAM12857.1|AF494043_1 chaperonin containing TCP-1 delta subun... 119 4e-26
>ref|NP_188447.1| chaperonin subunit, putative; protein id: At3g18190.1, supported by
cDNA: 7925., supported by cDNA: gi_20466821 [Arabidopsis
thaliana] gi|9294075|dbj|BAB02032.1| cytosolic
chaperonin, delta-subunit [Arabidopsis thaliana]
gi|20466822|gb|AAM20728.1| chaperonin subunit, putative
[Arabidopsis thaliana] gi|28059669|gb|AAO30081.1|
chaperonin subunit, putative [Arabidopsis thaliana]
Length = 536
Score = 142 bits (359), Expect = 2e-33
Identities = 73/76 (96%), Positives = 75/76 (98%)
Frame = -2
Query: 574 TLAENAGLNPMAIVTELRNRHAQGEINTGINVRKGQITNILEENVVQPLLVSTSAITLAT 395
TLAENAGLNP+AIVTELRN+HAQGEIN GINVRKGQITNILEENVVQPLLVSTSAITLAT
Sbjct: 461 TLAENAGLNPIAIVTELRNKHAQGEINAGINVRKGQITNILEENVVQPLLVSTSAITLAT 520
Query: 394 ECVRMILKIDDIVTVR 347
ECVRMILKIDDIVTVR
Sbjct: 521 ECVRMILKIDDIVTVR 536
>gb|AAM66101.1| chaperonin subunit, putative [Arabidopsis thaliana]
Length = 536
Score = 142 bits (359), Expect = 2e-33
Identities = 73/76 (96%), Positives = 75/76 (98%)
Frame = -2
Query: 574 TLAENAGLNPMAIVTELRNRHAQGEINTGINVRKGQITNILEENVVQPLLVSTSAITLAT 395
TLAENAGLNP+AIVTELRN+HAQGEIN GINVRKGQITNILEENVVQPLLVSTSAITLAT
Sbjct: 461 TLAENAGLNPIAIVTELRNKHAQGEINAGINVRKGQITNILEENVVQPLLVSTSAITLAT 520
Query: 394 ECVRMILKIDDIVTVR 347
ECVRMILKIDDIVTVR
Sbjct: 521 ECVRMILKIDDIVTVR 536
>emb|CAA09989.1| cytosolic chaperonin, delta-subunit [Glycine max]
Length = 533
Score = 141 bits (355), Expect = 7e-33
Identities = 73/76 (96%), Positives = 74/76 (97%)
Frame = -2
Query: 574 TLAENAGLNPMAIVTELRNRHAQGEINTGINVRKGQITNILEENVVQPLLVSTSAITLAT 395
TLAENAGLNP+AIVTELRNRHAQGEIN GINVRKGQITNILEENVVQP LVSTSAITLAT
Sbjct: 458 TLAENAGLNPIAIVTELRNRHAQGEINAGINVRKGQITNILEENVVQPPLVSTSAITLAT 517
Query: 394 ECVRMILKIDDIVTVR 347
ECVRMILKIDDIVTVR
Sbjct: 518 ECVRMILKIDDIVTVR 533
>gb|AAG13521.1|AC068924_26 putative cytosolic chaperonin, delta-subunit [Oryza sativa
(japonica cultivar-group)]
Length = 541
Score = 130 bits (327), Expect = 1e-29
Identities = 66/76 (86%), Positives = 72/76 (93%)
Frame = -2
Query: 574 TLAENAGLNPMAIVTELRNRHAQGEINTGINVRKGQITNILEENVVQPLLVSTSAITLAT 395
TLAENAGL+P++ VTELRNRHA+GE N GINVRKG+ITNILEENVVQPLLVSTSA+TLA
Sbjct: 466 TLAENAGLDPISTVTELRNRHAKGEKNAGINVRKGRITNILEENVVQPLLVSTSAVTLAC 525
Query: 394 ECVRMILKIDDIVTVR 347
ECVRMILKIDDIVTVR
Sbjct: 526 ECVRMILKIDDIVTVR 541
>gb|AAM12857.1|AF494043_1 chaperonin containing TCP-1 delta subunit [Physarum polycephalum]
Length = 539
Score = 119 bits (297), Expect = 4e-26
Identities = 61/76 (80%), Positives = 67/76 (87%)
Frame = -2
Query: 574 TLAENAGLNPMAIVTELRNRHAQGEINTGINVRKGQITNILEENVVQPLLVSTSAITLAT 395
TLAENAGL+P+AIVTELRNRHAQGE GINV+KG ITN+LEENVVQPLLV TSA+TLAT
Sbjct: 464 TLAENAGLHPIAIVTELRNRHAQGEKTAGINVKKGAITNMLEENVVQPLLVDTSAVTLAT 523
Query: 394 ECVRMILKIDDIVTVR 347
E V M+LKIDDIV R
Sbjct: 524 ETVVMLLKIDDIVITR 539
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 466,053,855
Number of Sequences: 1393205
Number of extensions: 9279467
Number of successful extensions: 24812
Number of sequences better than 10.0: 378
Number of HSP's better than 10.0 without gapping: 23742
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24707
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 21530810025
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
