Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005441A_C01 KMC005441A_c01
(619 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_200030.1| homeodomain protein; protein id: At5g52170.1 [A... 74 2e-12
ref|NP_191674.1| homeodomain protein, GLABRA2 like 1 (HD-GL2-1);... 73 3e-12
emb|CAB45018.1| homeodomain GLABRA2 like 1 protein [Arabidopsis ... 73 3e-12
gb|AAL83725.1|AF328842_1 homeodomain protein HB2 [Picea abies] 73 3e-12
pir||T01237 hypothetical protein F6N23.10 - Arabidopsis thaliana... 72 4e-12
>ref|NP_200030.1| homeodomain protein; protein id: At5g52170.1 [Arabidopsis thaliana]
gi|8885530|dbj|BAA97460.1| homeodomain transcription
factor-like [Arabidopsis thaliana]
Length = 682
Score = 73.9 bits (180), Expect = 2e-12
Identities = 39/62 (62%), Positives = 47/62 (74%), Gaps = 5/62 (8%)
Frame = -3
Query: 578 STSQKGVAAADGG-----SGGCLLTVGFQILVNNMPTANLSVESVDTVNNLISCTIQKIK 414
S+S DGG S GCLLTVGFQILVN++PTA L+VESV+TVNNLI+CTI KI+
Sbjct: 616 SSSSSDQFDTDGGLVNQESKGCLLTVGFQILVNSLPTAKLNVESVETVNNLIACTIHKIR 675
Query: 413 AS 408
A+
Sbjct: 676 AA 677
>ref|NP_191674.1| homeodomain protein, GLABRA2 like 1 (HD-GL2-1); protein id:
At3g61150.1, supported by cDNA: gi_15292864, supported
by cDNA: gi_20465804 [Arabidopsis thaliana]
gi|11346374|pir||T47907 homeobox protein - Arabidopsis
thaliana gi|6850882|emb|CAB71045.1| homeobox protein
[Arabidopsis thaliana] gi|15292865|gb|AAK92803.1|
putative homeobox protein [Arabidopsis thaliana]
gi|20465805|gb|AAM20391.1| putative homeobox protein
[Arabidopsis thaliana]
Length = 808
Score = 73.2 bits (178), Expect = 3e-12
Identities = 37/68 (54%), Positives = 50/68 (73%), Gaps = 3/68 (4%)
Frame = -3
Query: 602 NNDSSNKSSTSQKGVAAADGG---SGGCLLTVGFQILVNNMPTANLSVESVDTVNNLISC 432
N + + +++ + +GG GG LLTV FQILVN++PTA L+VESV+TVNNLISC
Sbjct: 735 NGQAGTQRCAAEERNSIGNGGCMEEGGSLLTVAFQILVNSLPTAKLTVESVETVNNLISC 794
Query: 431 TIQKIKAS 408
T+QKIKA+
Sbjct: 795 TVQKIKAA 802
>emb|CAB45018.1| homeodomain GLABRA2 like 1 protein [Arabidopsis thaliana]
Length = 808
Score = 73.2 bits (178), Expect = 3e-12
Identities = 37/68 (54%), Positives = 50/68 (73%), Gaps = 3/68 (4%)
Frame = -3
Query: 602 NNDSSNKSSTSQKGVAAADGG---SGGCLLTVGFQILVNNMPTANLSVESVDTVNNLISC 432
N + + +++ + +GG GG LLTV FQILVN++PTA L+VESV+TVNNLISC
Sbjct: 735 NGQAGTQRCAAEERNSIGNGGCMEEGGSLLTVAFQILVNSLPTAKLTVESVETVNNLISC 794
Query: 431 TIQKIKAS 408
T+QKIKA+
Sbjct: 795 TVQKIKAA 802
>gb|AAL83725.1|AF328842_1 homeodomain protein HB2 [Picea abies]
Length = 708
Score = 73.2 bits (178), Expect = 3e-12
Identities = 37/55 (67%), Positives = 43/55 (77%)
Frame = -3
Query: 572 SQKGVAAADGGSGGCLLTVGFQILVNNMPTANLSVESVDTVNNLISCTIQKIKAS 408
S GV GG LLTV FQILVN++PTA L+VESV+TVNNLISCT+QKIKA+
Sbjct: 648 SGNGVGVNSPRVGGSLLTVAFQILVNSLPTAKLTVESVETVNNLISCTVQKIKAA 702
>pir||T01237 hypothetical protein F6N23.10 - Arabidopsis thaliana
gi|3047106|gb|AAC13617.1| Arabidopsis thaliana
homeodomain protein AHDP (SP:P93041)
gi|7267412|emb|CAB80882.1| homeodomain protein AHDP
[Arabidopsis thaliana]
Length = 590
Score = 72.4 bits (176), Expect = 4e-12
Identities = 34/43 (79%), Positives = 40/43 (92%)
Frame = -3
Query: 536 GGCLLTVGFQILVNNMPTANLSVESVDTVNNLISCTIQKIKAS 408
GG LLTV FQILVNN+PTA L+VESV+TVNNLISCT+QKI+A+
Sbjct: 543 GGSLLTVAFQILVNNLPTAKLTVESVETVNNLISCTVQKIRAA 585
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 558,924,774
Number of Sequences: 1393205
Number of extensions: 12505699
Number of successful extensions: 38660
Number of sequences better than 10.0: 56
Number of HSP's better than 10.0 without gapping: 34406
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38345
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 24733321959
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
