Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005440A_C01 KMC005440A_c01
(687 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|P40590|RL34_PEA 60S RIBOSOMAL PROTEIN L34 gi|2119150|pir||S60... 231 7e-60
sp|P41098|RL34_TOBAC 60S RIBOSOMAL PROTEIN L34 gi|1076636|pir||S... 230 2e-59
ref|NP_174010.1| 60s ribosomal protein L34; protein id: At1g2688... 225 4e-58
gb|AAM66030.1| 60s ribosomal protein L34 [Arabidopsis thaliana] 224 9e-58
ref|NP_177120.1| 60S ribosomal protein L34, putative; protein id... 224 1e-57
>sp|P40590|RL34_PEA 60S RIBOSOMAL PROTEIN L34 gi|2119150|pir||S60476 ribosomal protein
L34, cytosolic - garden pea gi|498908|gb|AAA86953.1|
ribosomal protein L34 homolog
Length = 120
Score = 231 bits (589), Expect = 7e-60
Identities = 116/119 (97%), Positives = 117/119 (97%)
Frame = -2
Query: 665 MVQRLTYRRRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPT 486
MVQRLTYRRRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPT
Sbjct: 1 MVQRLTYRRRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPT 60
Query: 485 EYKRSRLSRNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASK 309
EYKRSRLSRNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQK KEK A+K
Sbjct: 61 EYKRSRLSRNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKTKEKQAAK 119
>sp|P41098|RL34_TOBAC 60S RIBOSOMAL PROTEIN L34 gi|1076636|pir||S48027 ribosomal protein
L34, cytosolic - common tobacco gi|436030|gb|AAA57158.1|
60S ribosomal protein L34 gi|436032|gb|AAA57159.1| 60S
ribosomal protein L34
Length = 120
Score = 230 bits (586), Expect = 2e-59
Identities = 114/120 (95%), Positives = 119/120 (99%)
Frame = -2
Query: 665 MVQRLTYRRRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPT 486
MVQRLTYR+RHSYATKSNQHRVVKTPGGKL+YQ+TKKRASGPKCPVTGKRIQGIPHLRPT
Sbjct: 1 MVQRLTYRKRHSYATKSNQHRVVKTPGGKLIYQSTKKRASGPKCPVTGKRIQGIPHLRPT 60
Query: 485 EYKRSRLSRNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKA 306
EYKRSRLSRNRRTVNRAYGGVLSG AVRERIIRAFLVEEQKIVKKVLKIQKAKEKLA+K+
Sbjct: 61 EYKRSRLSRNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLAAKS 120
>ref|NP_174010.1| 60s ribosomal protein L34; protein id: At1g26880.1, supported by
cDNA: 7182., supported by cDNA: gi_19310598 [Arabidopsis
thaliana] gi|2500376|sp|Q42351|RL34_ARATH 60S ribosomal
protein L34 gi|25295628|pir||F86395 60s ribosomal
protein L34 [imported] - Arabidopsis thaliana
gi|4262177|gb|AAD14494.1| 23552
gi|19310599|gb|AAL85030.1| putative 60s ribosomal
protein L34 [Arabidopsis thaliana]
gi|21436403|gb|AAM51402.1| putative 60S ribosomal
protein L34 [Arabidopsis thaliana]
Length = 120
Score = 225 bits (574), Expect = 4e-58
Identities = 112/120 (93%), Positives = 116/120 (96%)
Frame = -2
Query: 665 MVQRLTYRRRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPT 486
MVQRL YR RHSYATKSNQHR+VKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRP+
Sbjct: 1 MVQRLVYRSRHSYATKSNQHRIVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPS 60
Query: 485 EYKRSRLSRNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKA 306
EYKRSRLSRNRRTVNRAYGGVLSG AVRERIIRAFLVEEQKIVKKVLK+QKAKEK+A KA
Sbjct: 61 EYKRSRLSRNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKLQKAKEKVAPKA 120
>gb|AAM66030.1| 60s ribosomal protein L34 [Arabidopsis thaliana]
Length = 120
Score = 224 bits (571), Expect = 9e-58
Identities = 111/120 (92%), Positives = 116/120 (96%)
Frame = -2
Query: 665 MVQRLTYRRRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPT 486
MVQRL YR RHSYATKSNQHR+VKTPGGKLVYQTTKK+ASGPKCPVTGKRIQGIPHLRP+
Sbjct: 1 MVQRLVYRSRHSYATKSNQHRIVKTPGGKLVYQTTKKKASGPKCPVTGKRIQGIPHLRPS 60
Query: 485 EYKRSRLSRNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKA 306
EYKRSRLSRNRRTVNRAYGGVLSG AVRERIIRAFLVEEQKIVKKVLK+QKAKEK+A KA
Sbjct: 61 EYKRSRLSRNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKLQKAKEKVAPKA 120
>ref|NP_177120.1| 60S ribosomal protein L34, putative; protein id: At1g69620.1,
supported by cDNA: 1568., supported by cDNA:
gi_11692901, supported by cDNA: gi_11993856, supported
by cDNA: gi_13194821, supported by cDNA: gi_15450704,
supported by cDNA: gi_17386143 [Arabidopsis thaliana]
gi|25295629|pir||H96717 probable 60S ribosomal protein
L34 T6C23.18 [imported] - Arabidopsis thaliana
gi|10092293|gb|AAG12705.1|AC021046_6 60S ribosomal
protein L34, putative; 10936-9755 [Arabidopsis thaliana]
gi|11692902|gb|AAG40054.1|AF324703_1 T6C23.18
[Arabidopsis thaliana]
gi|11993857|gb|AAG42912.1|AF327531_1 putative 60S
ribosomal protein L34 [Arabidopsis thaliana]
gi|12325186|gb|AAG52537.1|AC013289_4 putative 60S
ribosomal protein L34; 81002-79821 [Arabidopsis
thaliana] gi|13194822|gb|AAK15573.1|AF349526_1 putative
60S ribosomal protein L34 [Arabidopsis thaliana]
gi|15450705|gb|AAK96624.1| F24J1.23/F24J1.23
[Arabidopsis thaliana]
gi|17386144|gb|AAL38618.1|AF446885_1 F24J1.23/F24J1.23
[Arabidopsis thaliana] gi|21553675|gb|AAM62768.1| 60S
ribosomal protein L34, putative [Arabidopsis thaliana]
Length = 119
Score = 224 bits (570), Expect = 1e-57
Identities = 111/119 (93%), Positives = 114/119 (95%)
Frame = -2
Query: 665 MVQRLTYRRRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPT 486
MVQRL YR RHSYATKSNQHR+VKTPGGKL YQTTKKRASGPKCPVTGKRIQGIPHLRPT
Sbjct: 1 MVQRLVYRSRHSYATKSNQHRIVKTPGGKLTYQTTKKRASGPKCPVTGKRIQGIPHLRPT 60
Query: 485 EYKRSRLSRNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASK 309
EYKRSRLSRNRRTVNRAYGGVLSG AVRERIIRAFLVEEQKIVKKVLK+QKAKEK+A K
Sbjct: 61 EYKRSRLSRNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKLQKAKEKVAPK 119
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 594,425,118
Number of Sequences: 1393205
Number of extensions: 13373349
Number of successful extensions: 36825
Number of sequences better than 10.0: 90
Number of HSP's better than 10.0 without gapping: 34001
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36546
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 30835865868
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
