Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005439A_C01 KMC005439A_c01
(842 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||S56655 lipoxygenase (EC 1.13.11.12) loxG - garden pea gi|54... 401 e-111
sp|P38414|LOX1_LENCU Lipoxygenase gi|467565|emb|CAA50483.1| lipo... 361 6e-99
sp|P09918|LOX3_PEA Seed lipoxygenase-3 gi|81918|pir||S01142 lipo... 354 8e-97
prf||1502333A lipoxygenase 3 338 6e-92
pdb|1LNH| Lipoxygenase-3(Soybean) Non-Heme Fe(Ii) Metalloprote... 337 2e-91
>pir||S56655 lipoxygenase (EC 1.13.11.12) loxG - garden pea
gi|541746|emb|CAA53730.1| lipoxygenase [Pisum sativum]
Length = 868
Score = 401 bits (1031), Expect = e-111
Identities = 193/263 (73%), Positives = 227/263 (85%)
Frame = +2
Query: 53 MFSGVTGLINRGQKVKGTVVVIHKNLLDINELTKVKTVSGAITGAFGAVGQAIGTVVDAA 232
MFSGV G+INRGQK+KGT ++ KN+LDIN LT +K+ +G +TGAFGA+G AIGTVVD A
Sbjct: 1 MFSGVAGIINRGQKLKGTGGLMQKNVLDINALTAIKSPTGIVTGAFGAIGGAIGTVVDTA 60
Query: 233 TSLAGRSVALKLISATVADASGKGKVGKQTWVEGVITNLPKLGAGQTAYDIHFEWNFDEM 412
TS GRSVALKLISAT AD SGKGKVGKQT++EG++T++ LGAGQ+AY IHFEWN D M
Sbjct: 61 TSFIGRSVALKLISATSADGSGKGKVGKQTFLEGLLTSILTLGAGQSAYTIHFEWNSD-M 119
Query: 413 GIPGAFYIENFLSGGEFLLISVTLHDIPNKGNIDFLCNSWVYNNKNYKTERIFFSNQTYL 592
GIPGAFYIENF+ EF L+S+TL DIPN G+I F+CNSW+YN+K YK++RIFF+N+TYL
Sbjct: 120 GIPGAFYIENFMQH-EFFLVSLTLEDIPNHGSIHFVCNSWIYNDKKYKSDRIFFANKTYL 178
Query: 593 PGETPAPLVYYREQELKTVRGDGTGERKEWDRVYDYDVYNDLGDPDSNIRLKRPVLGGNS 772
P ETPAPLV+YR++ELKT+RGDGTGERKEWDR+YDYDVYNDLG PD L RPVLGG+S
Sbjct: 179 PNETPAPLVHYRQEELKTLRGDGTGERKEWDRIYDYDVYNDLGAPDQKATLARPVLGGSS 238
Query: 773 DLPYPRRGRTGRKPAKKDPQSES 841
LPYPRRGRTGRKPAKKDP SES
Sbjct: 239 ILPYPRRGRTGRKPAKKDPNSES 261
>sp|P38414|LOX1_LENCU Lipoxygenase gi|467565|emb|CAA50483.1| lipoxygenase [Lens
culinaris]
Length = 866
Score = 361 bits (927), Expect = 6e-99
Identities = 167/256 (65%), Positives = 209/256 (81%)
Frame = +2
Query: 74 LINRGQKVKGTVVVIHKNLLDINELTKVKTVSGAITGAFGAVGQAIGTVVDAATSLAGRS 253
L RGQK+KGTV+++ KN+LDIN LT ++ SG I GAFG VG G+++D AT+ GRS
Sbjct: 5 LFGRGQKLKGTVILMQKNVLDINALTAAQSPSGIIGGAFGVVGSIAGSIIDTATAFLGRS 64
Query: 254 VALKLISATVADASGKGKVGKQTWVEGVITNLPKLGAGQTAYDIHFEWNFDEMGIPGAFY 433
V L+LISATVADASGKGKV K+ ++EG++T++P LG Q+A+ +HFEW+ MG PGAFY
Sbjct: 65 VRLRLISATVADASGKGKVSKEAFLEGLLTSIPTLGDKQSAFSVHFEWD-SNMGTPGAFY 123
Query: 434 IENFLSGGEFLLISVTLHDIPNKGNIDFLCNSWVYNNKNYKTERIFFSNQTYLPGETPAP 613
IENF+ GGEF L+S+TL D+PN G+I F CNSW+YN+K Y+++RIFF+N+TYLP TPAP
Sbjct: 124 IENFMQGGEFFLVSLTLDDVPNVGSIKFACNSWIYNDKKYQSDRIFFANKTYLPSATPAP 183
Query: 614 LVYYREQELKTVRGDGTGERKEWDRVYDYDVYNDLGDPDSNIRLKRPVLGGNSDLPYPRR 793
LV YR++ELKT+RGDGTGER+EWDR+YDYDVYNDLG PD L RPVLGG+S LPYPRR
Sbjct: 184 LVSYRQEELKTLRGDGTGERQEWDRIYDYDVYNDLGAPDQKATLGRPVLGGSSTLPYPRR 243
Query: 794 GRTGRKPAKKDPQSES 841
GRTGRK K+PQSES
Sbjct: 244 GRTGRKKTVKEPQSES 259
>sp|P09918|LOX3_PEA Seed lipoxygenase-3 gi|81918|pir||S01142 lipoxygenase (EC
1.13.11.12) 3 [similarity] - garden pea
gi|20800|emb|CAA30666.1| lipocygenase (AA 1 - 861)
[Pisum sativum] gi|469156|emb|CAA55319.1| lipoxygenase
[Pisum sativum]
Length = 861
Score = 354 bits (909), Expect = 8e-97
Identities = 172/263 (65%), Positives = 213/263 (80%)
Frame = +2
Query: 53 MFSGVTGLINRGQKVKGTVVVIHKNLLDINELTKVKTVSGAITGAFGAVGQAIGTVVDAA 232
MFSGVTG++NRG K+KGTVV++ KN+LDIN LT TV G I F +G+ VD
Sbjct: 1 MFSGVTGILNRGHKIKGTVVLMRKNVLDINSLT---TVGGVIGQGF----DILGSTVDNL 53
Query: 233 TSLAGRSVALKLISATVADASGKGKVGKQTWVEGVITNLPKLGAGQTAYDIHFEWNFDEM 412
T+ GRSV+L+LISAT DA+GKGK+GK T++EG+I++LP LGAGQ+A+ IHFEW+ D+M
Sbjct: 54 TAFLGRSVSLQLISATKPDATGKGKLGKATFLEGIISSLPTLGAGQSAFKIHFEWD-DDM 112
Query: 413 GIPGAFYIENFLSGGEFLLISVTLHDIPNKGNIDFLCNSWVYNNKNYKTERIFFSNQTYL 592
GIPGAFYI+NF+ EF L+S+TL DIPN G+I F+CNSW+YN K++K +RIFF+NQTYL
Sbjct: 113 GIPGAFYIKNFMQT-EFFLVSLTLDDIPNHGSIYFVCNSWIYNAKHHKIDRIFFANQTYL 171
Query: 593 PGETPAPLVYYREQELKTVRGDGTGERKEWDRVYDYDVYNDLGDPDSNIRLKRPVLGGNS 772
P ETPAPLV+YRE+EL +RGDGTGERKEW+R+YDYDVYNDLG+PDS RPVLGG+
Sbjct: 172 PSETPAPLVHYREEELNNLRGDGTGERKEWERIYDYDVYNDLGNPDSGENHARPVLGGSE 231
Query: 773 DLPYPRRGRTGRKPAKKDPQSES 841
PYPRRGRTGRKP +KDP SES
Sbjct: 232 TYPYPRRGRTGRKPTRKDPNSES 254
>prf||1502333A lipoxygenase 3
Length = 858
Score = 338 bits (867), Expect = 6e-92
Identities = 163/260 (62%), Positives = 203/260 (77%), Gaps = 3/260 (1%)
Frame = +2
Query: 71 GLINRGQKVKGTVVVIHKNLLDINELTKVKTVSGAITGAFGAVGQA---IGTVVDAATSL 241
GL++RG K+KGTVV++ KN+LD+N +T V G +GQ +G+ +D T+
Sbjct: 4 GLLHRGHKIKGTVVLMRKNVLDVNSVTSVG----------GIIGQGLDLVGSTLDTLTAF 53
Query: 242 AGRSVALKLISATVADASGKGKVGKQTWVEGVITNLPKLGAGQTAYDIHFEWNFDEMGIP 421
GR V+L+LISAT ADA+GKGK+GK T++EG+IT+LP LGAGQ+A+ I+FEW+ D GI
Sbjct: 54 LGRPVSLQLISATKADANGKGKLGKATFLEGIITSLPTLGAGQSAFKINFEWD-DGSGIL 112
Query: 422 GAFYIENFLSGGEFLLISVTLHDIPNKGNIDFLCNSWVYNNKNYKTERIFFSNQTYLPGE 601
GAFYI+NF+ GEF L+S+TL DIPN G+I F+CNSW+YN K +K++RIFF+NQTYLP E
Sbjct: 113 GAFYIKNFMQTGEFFLVSLTLEDIPNHGSIHFVCNSWIYNAKLFKSDRIFFANQTYLPSE 172
Query: 602 TPAPLVYYREQELKTVRGDGTGERKEWDRVYDYDVYNDLGDPDSNIRLKRPVLGGNSDLP 781
TPAPLV YRE+EL +RGDGTGERKEW+RVYDYDVYNDLGDPD RPVLGGN P
Sbjct: 173 TPAPLVKYREEELHNLRGDGTGERKEWERVYDYDVYNDLGDPDKGENHARPVLGGNDTFP 232
Query: 782 YPRRGRTGRKPAKKDPQSES 841
YPRRGRTGRKP +KDP SES
Sbjct: 233 YPRRGRTGRKPTRKDPNSES 252
>pdb|1LNH| Lipoxygenase-3(Soybean) Non-Heme Fe(Ii) Metalloprotein
gi|4388888|pdb|1BYT| Lipoxygenase-3 (Soybean) Complex
With 4-Nitrocatechol gi|17942578|pdb|1IK3|A Chain A,
Lipoxygenase-3 (Soybean) Complex With
13(S)-Hydroperoxy-9(Z) ,11(E)-Octadecadienoic Acid
gi|1794172|gb|AAB41272.1| lipoxygenase-3
Length = 857
Score = 337 bits (863), Expect = 2e-91
Identities = 163/260 (62%), Positives = 204/260 (77%), Gaps = 3/260 (1%)
Frame = +2
Query: 71 GLINRGQKVKGTVVVIHKNLLDINELTKVKTVSGAITGAFGAVGQA---IGTVVDAATSL 241
GL++RG K+KGTVV++ KN+LD+N +T V G +GQ +G+ +D T+
Sbjct: 4 GLLHRGHKIKGTVVLMRKNVLDVNSVTSVG----------GIIGQGLDLVGSTLDTLTAF 53
Query: 242 AGRSVALKLISATVADASGKGKVGKQTWVEGVITNLPKLGAGQTAYDIHFEWNFDEMGIP 421
GRSV+L+LISAT ADA+GKGK+GK T++EG+IT+LP LGAGQ+A+ I+FEW+ D GIP
Sbjct: 54 LGRSVSLQLISATKADANGKGKLGKATFLEGIITSLPTLGAGQSAFKINFEWD-DGSGIP 112
Query: 422 GAFYIENFLSGGEFLLISVTLHDIPNKGNIDFLCNSWVYNNKNYKTERIFFSNQTYLPGE 601
GAFYI+NF+ EF L+S+TL DIPN G+I F+CNSW+YN K +K++RIFF+NQTYLP E
Sbjct: 113 GAFYIKNFMQT-EFFLVSLTLEDIPNHGSIHFVCNSWIYNAKLFKSDRIFFANQTYLPSE 171
Query: 602 TPAPLVYYREQELKTVRGDGTGERKEWDRVYDYDVYNDLGDPDSNIRLKRPVLGGNSDLP 781
TPAPLV YRE+EL +RGDGTGERKEW+R+YDYDVYNDLGDPD RPVLGGN P
Sbjct: 172 TPAPLVKYREEELHNLRGDGTGERKEWERIYDYDVYNDLGDPDKGENHARPVLGGNDTFP 231
Query: 782 YPRRGRTGRKPAKKDPQSES 841
YPRRGRTGRKP +KDP SES
Sbjct: 232 YPRRGRTGRKPTRKDPNSES 251
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 806,081,454
Number of Sequences: 1393205
Number of extensions: 20173289
Number of successful extensions: 72997
Number of sequences better than 10.0: 169
Number of HSP's better than 10.0 without gapping: 65727
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72365
length of database: 448,689,247
effective HSP length: 122
effective length of database: 278,718,237
effective search space used: 44037481446
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
