Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005436A_C01 KMC005436A_c01
(866 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB11089.1| contains similarity to unknown protein~gb|AAF636... 301 8e-81
ref|NP_568662.1| putative protein; protein id: At5g46340.1, supp... 301 8e-81
gb|AAL11600.1|AF424606_1 AT5g46340/MPL12_14 [Arabidopsis thaliana] 301 8e-81
dbj|BAB89482.1| OSJNBb0035I14.15 [Oryza sativa (japonica cultiva... 273 2e-72
ref|NP_187307.1| unknown protein; protein id: At3g06550.1 [Arabi... 244 2e-63
>dbj|BAB11089.1| contains similarity to unknown
protein~gb|AAF63638.1~gene_id:MPL12.14 [Arabidopsis
thaliana]
Length = 436
Score = 301 bits (771), Expect = 8e-81
Identities = 147/198 (74%), Positives = 168/198 (84%)
Frame = +1
Query: 271 MVDAGPVTPGQVSFLLGVIPVFITWIYSEYLEYKKTAFPPKVHSDTSLDELGKDAIKEDD 450
MVD GP+TPGQVSFLLGVIP+F+ WIYSE LEY+K+ P K HSD +L ELG A K+DD
Sbjct: 1 MVDPGPITPGQVSFLLGVIPIFVGWIYSELLEYRKSWVPLKPHSDNNLVELGDVAEKDDD 60
Query: 451 RAIWLETGLPRSASAKLHASSVKLNLIRFLTMDDSFLLENRATWRAVSEFGLILFYFYVC 630
+A LE GL RS S K H SS++ N+IRFL+M+DSFLLE+RAT RA+SEFG IL YFY+C
Sbjct: 61 KADLLEGGLARSPSVKFHNSSIRTNIIRFLSMEDSFLLEHRATLRAMSEFGAILIYFYIC 120
Query: 631 DRTYILGNSTKNYNRDLFLFLYLLLIIVSAMTSLKKHTDSSAFSGRSILYLNRHQTEEWK 810
DRT +LG+STKNYNRDLFLFLY+LLIIVSAMTSL+KH D S SG+SILYLNRHQTEEWK
Sbjct: 121 DRTELLGDSTKNYNRDLFLFLYVLLIIVSAMTSLRKHNDKSPISGKSILYLNRHQTEEWK 180
Query: 811 GWMQVLFLMYHYFAATEI 864
GWMQVLFLMYHYFAA EI
Sbjct: 181 GWMQVLFLMYHYFAAAEI 198
>ref|NP_568662.1| putative protein; protein id: At5g46340.1, supported by cDNA:
gi_15983463 [Arabidopsis thaliana]
gi|22531002|gb|AAM97005.1| putative protein [Arabidopsis
thaliana]
Length = 540
Score = 301 bits (771), Expect = 8e-81
Identities = 147/198 (74%), Positives = 168/198 (84%)
Frame = +1
Query: 271 MVDAGPVTPGQVSFLLGVIPVFITWIYSEYLEYKKTAFPPKVHSDTSLDELGKDAIKEDD 450
MVD GP+TPGQVSFLLGVIP+F+ WIYSE LEY+K+ P K HSD +L ELG A K+DD
Sbjct: 1 MVDPGPITPGQVSFLLGVIPIFVGWIYSELLEYRKSWVPLKPHSDNNLVELGDVAEKDDD 60
Query: 451 RAIWLETGLPRSASAKLHASSVKLNLIRFLTMDDSFLLENRATWRAVSEFGLILFYFYVC 630
+A LE GL RS S K H SS++ N+IRFL+M+DSFLLE+RAT RA+SEFG IL YFY+C
Sbjct: 61 KADLLEGGLARSPSVKFHNSSIRTNIIRFLSMEDSFLLEHRATLRAMSEFGAILIYFYIC 120
Query: 631 DRTYILGNSTKNYNRDLFLFLYLLLIIVSAMTSLKKHTDSSAFSGRSILYLNRHQTEEWK 810
DRT +LG+STKNYNRDLFLFLY+LLIIVSAMTSL+KH D S SG+SILYLNRHQTEEWK
Sbjct: 121 DRTELLGDSTKNYNRDLFLFLYVLLIIVSAMTSLRKHNDKSPISGKSILYLNRHQTEEWK 180
Query: 811 GWMQVLFLMYHYFAATEI 864
GWMQVLFLMYHYFAA EI
Sbjct: 181 GWMQVLFLMYHYFAAAEI 198
>gb|AAL11600.1|AF424606_1 AT5g46340/MPL12_14 [Arabidopsis thaliana]
Length = 540
Score = 301 bits (771), Expect = 8e-81
Identities = 147/198 (74%), Positives = 168/198 (84%)
Frame = +1
Query: 271 MVDAGPVTPGQVSFLLGVIPVFITWIYSEYLEYKKTAFPPKVHSDTSLDELGKDAIKEDD 450
MVD GP+TPGQVSFLLGVIP+F+ WIYSE LEY+K+ P K HSD +L ELG A K+DD
Sbjct: 1 MVDPGPITPGQVSFLLGVIPIFVGWIYSELLEYRKSWVPLKPHSDNNLVELGDVAEKDDD 60
Query: 451 RAIWLETGLPRSASAKLHASSVKLNLIRFLTMDDSFLLENRATWRAVSEFGLILFYFYVC 630
+A LE GL RS S K H SS++ N+IRFL+M+DSFLLE+RAT RA+SEFG IL YFY+C
Sbjct: 61 KADLLEGGLARSPSVKFHNSSIRTNIIRFLSMEDSFLLEHRATLRAMSEFGAILIYFYIC 120
Query: 631 DRTYILGNSTKNYNRDLFLFLYLLLIIVSAMTSLKKHTDSSAFSGRSILYLNRHQTEEWK 810
DRT +LG+STKNYNRDLFLFLY+LLIIVSAMTSL+KH D S SG+SILYLNRHQTEEWK
Sbjct: 121 DRTELLGDSTKNYNRDLFLFLYVLLIIVSAMTSLRKHNDKSPISGKSILYLNRHQTEEWK 180
Query: 811 GWMQVLFLMYHYFAATEI 864
GWMQVLFLMYHYFAA EI
Sbjct: 181 GWMQVLFLMYHYFAAAEI 198
>dbj|BAB89482.1| OSJNBb0035I14.15 [Oryza sativa (japonica cultivar-group)]
gi|20161484|dbj|BAB90407.1| similar to Arabidopsis
thaliana chromosome 5, AT5g46340/MPL12_14 [Oryza sativa
(japonica cultivar-group)]
Length = 541
Score = 273 bits (698), Expect = 2e-72
Identities = 135/194 (69%), Positives = 158/194 (80%)
Frame = +1
Query: 283 GPVTPGQVSFLLGVIPVFITWIYSEYLEYKKTAFPPKVHSDTSLDELGKDAIKEDDRAIW 462
GPVT GQVSFLLG+ PV I WIYSE LEY+K++ KVHSD++L+ +KEDD+ +
Sbjct: 5 GPVTAGQVSFLLGLFPVLIAWIYSEVLEYRKSS-SMKVHSDSNLEN---GTVKEDDKTVL 60
Query: 463 LETGLPRSASAKLHASSVKLNLIRFLTMDDSFLLENRATWRAVSEFGLILFYFYVCDRTY 642
LE GL +S S K +S K NLIRF+TMD+SFLLENRA RA++EFG++L YFY+CDRT
Sbjct: 61 LEGGLSKSPSTKFRINSTKANLIRFITMDESFLLENRAVLRAMAEFGIVLVYFYICDRTN 120
Query: 643 ILGNSTKNYNRDLFLFLYLLLIIVSAMTSLKKHTDSSAFSGRSILYLNRHQTEEWKGWMQ 822
I S K+YNRDLFLFLY+LLII SA+TSLKKH D SAFSG+SILYLNRHQTEEWKGWMQ
Sbjct: 121 IFPESKKSYNRDLFLFLYILLIIASALTSLKKHHDKSAFSGKSILYLNRHQTEEWKGWMQ 180
Query: 823 VLFLMYHYFAATEI 864
VLFLMYHYFAATEI
Sbjct: 181 VLFLMYHYFAATEI 194
>ref|NP_187307.1| unknown protein; protein id: At3g06550.1 [Arabidopsis thaliana]
gi|12322675|gb|AAG51327.1|AC020580_7 unknown protein;
43703-46116 [Arabidopsis thaliana]
Length = 418
Score = 244 bits (622), Expect = 2e-63
Identities = 115/198 (58%), Positives = 148/198 (74%), Gaps = 1/198 (0%)
Frame = +1
Query: 271 MVDAGPVTPGQVSFLLGVIPVFITWIYSEYLEYKKTAFPPKVHSDTSLDELGKDAIKEDD 450
M + PVTPG +S + G++PV + W+YSEYL Y K + K HSD +L E+ KD +KEDD
Sbjct: 1 MASSSPVTPGLMSVVFGIVPVIVAWLYSEYLHYAKYSVSAKTHSDVNLVEIAKDFVKEDD 60
Query: 451 RAIWLETGLP-RSASAKLHASSVKLNLIRFLTMDDSFLLENRATWRAVSEFGLILFYFYV 627
+A+ +E G +SAS + + LIRF+ +D+SFL+ENR T RA+ EF +++ YFY+
Sbjct: 61 KALLIEDGGGLQSASPRAKGPTTHSPLIRFVLLDESFLVENRLTLRAIIEFAVLMVYFYI 120
Query: 628 CDRTYILGNSTKNYNRDLFLFLYLLLIIVSAMTSLKKHTDSSAFSGRSILYLNRHQTEEW 807
CDRT + +S K+YNRDLFLFLY LLIIVSA+TS HTD S FSG++I+YLNRHQTEEW
Sbjct: 121 CDRTDVFNSSKKSYNRDLFLFLYFLLIIVSAITSFTIHTDKSPFSGKAIMYLNRHQTEEW 180
Query: 808 KGWMQVLFLMYHYFAATE 861
KGWMQVLFLMYHYFAA E
Sbjct: 181 KGWMQVLFLMYHYFAAAE 198
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 741,908,763
Number of Sequences: 1393205
Number of extensions: 16352164
Number of successful extensions: 50067
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 45974
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49511
length of database: 448,689,247
effective HSP length: 122
effective length of database: 278,718,237
effective search space used: 46267227342
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
