Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005434A_C01 KMC005434A_c01
(535 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB83610.1| 6b-interacting protein 1 [Nicotiana tabacum] 97 1e-19
gb|AAG50987.1|AC073395_29 hypothetical protein; 14486-13072 [Ara... 85 6e-16
dbj|BAB11544.1| gb|AAF01512.1~gene_id:MOP10.9~similar to unknown... 82 3e-15
ref|NP_566386.1| expressed protein; protein id: At3g11100.1, sup... 82 3e-15
ref|NP_568158.1| putative protein; protein id: At5g05550.1, supp... 82 3e-15
>dbj|BAB83610.1| 6b-interacting protein 1 [Nicotiana tabacum]
Length = 318
Score = 97.1 bits (240), Expect = 1e-19
Identities = 51/92 (55%), Positives = 65/92 (70%), Gaps = 8/92 (8%)
Frame = -2
Query: 534 EEEEEDEDD--------GRGSEVEEAEGEGLSRLAKAIERFGEVYERMEEQKVKQMVDLE 379
+EEEE E G E A EG SRLA+AI RF E+YER+E+ K +QMV+LE
Sbjct: 220 DEEEESETSSPAAITLAGARKEESGALAEGCSRLAEAIGRFAEIYERVEDAKQRQMVELE 279
Query: 378 KQRMQFTKDLELQRMQMFMDTQVQLERIKRGK 283
KQRMQF KDLE+QRM++ M++QVQLE++KR K
Sbjct: 280 KQRMQFAKDLEIQRMKLIMESQVQLEKLKRAK 311
>gb|AAG50987.1|AC073395_29 hypothetical protein; 14486-13072 [Arabidopsis thaliana]
Length = 348
Score = 84.7 bits (208), Expect = 6e-16
Identities = 41/101 (40%), Positives = 66/101 (64%), Gaps = 11/101 (10%)
Frame = -2
Query: 534 EEEEEDEDDG-----------RGSEVEEAEGEGLSRLAKAIERFGEVYERMEEQKVKQMV 388
+++EED+DD + +V+ +EG LA++I + GE +ER+E +K + M+
Sbjct: 146 DDDEEDDDDAGDWGFVVRKHRKVEDVDSSEGSAFRELARSILKLGEAFERIEGKKQQMMI 205
Query: 387 DLEKQRMQFTKDLELQRMQMFMDTQVQLERIKRGKRSGSND 265
+LEKQRM+ K+LELQRM M M+ Q++LE+ K GKR ++D
Sbjct: 206 ELEKQRMEVAKELELQRMNMLMEMQLELEKSKLGKRRAASD 246
>dbj|BAB11544.1| gb|AAF01512.1~gene_id:MOP10.9~similar to unknown protein
[Arabidopsis thaliana]
Length = 248
Score = 82.4 bits (202), Expect = 3e-15
Identities = 42/100 (42%), Positives = 67/100 (67%), Gaps = 11/100 (11%)
Frame = -2
Query: 534 EEEEEDEDD-----------GRGSEVEEAEGEGLSRLAKAIERFGEVYERMEEQKVKQMV 388
E+++ED+D+ R EV+ +EG LA AI +FGEVYER+E +K + M+
Sbjct: 143 EDDDEDDDEVGDWEFVARKHPRVEEVDLSEGSTCRELATAILKFGEVYERIEGKKQQMMI 202
Query: 387 DLEKQRMQFTKDLELQRMQMFMDTQVQLERIKRGKRSGSN 268
+LEKQRM+ TK++EL+RM M M+ Q+++E+ K KR+ ++
Sbjct: 203 ELEKQRMEVTKEVELKRMNMLMEMQLEIEKSKHRKRASAS 242
>ref|NP_566386.1| expressed protein; protein id: At3g11100.1, supported by cDNA:
126401., supported by cDNA: gi_17381250 [Arabidopsis
thaliana] gi|17381251|gb|AAL36044.1| AT3g11100/F11B9_105
[Arabidopsis thaliana]
Length = 249
Score = 82.4 bits (202), Expect = 3e-15
Identities = 40/100 (40%), Positives = 65/100 (65%), Gaps = 11/100 (11%)
Frame = -2
Query: 534 EEEEEDEDDG-----------RGSEVEEAEGEGLSRLAKAIERFGEVYERMEEQKVKQMV 388
+++EED+DD + +V+ +EG LA++I + GE +ER+E +K + M+
Sbjct: 146 DDDEEDDDDAGDWGFVVRKHRKVEDVDSSEGSAFRELARSILKLGEAFERIEGKKQQMMI 205
Query: 387 DLEKQRMQFTKDLELQRMQMFMDTQVQLERIKRGKRSGSN 268
+LEKQRM+ K+LELQRM M M+ Q++LE+ K GKR ++
Sbjct: 206 ELEKQRMEVAKELELQRMNMLMEMQLELEKSKLGKRRAAS 245
>ref|NP_568158.1| putative protein; protein id: At5g05550.1, supported by cDNA:
gi_15010667, supported by cDNA: gi_16974318 [Arabidopsis
thaliana] gi|15010668|gb|AAK73993.1| AT5g05550/MOP10_9
[Arabidopsis thaliana] gi|16974319|gb|AAL31144.1|
AT5g05550/MOP10_9 [Arabidopsis thaliana]
Length = 246
Score = 82.4 bits (202), Expect = 3e-15
Identities = 42/100 (42%), Positives = 67/100 (67%), Gaps = 11/100 (11%)
Frame = -2
Query: 534 EEEEEDEDD-----------GRGSEVEEAEGEGLSRLAKAIERFGEVYERMEEQKVKQMV 388
E+++ED+D+ R EV+ +EG LA AI +FGEVYER+E +K + M+
Sbjct: 143 EDDDEDDDEVGDWEFVARKHPRVEEVDLSEGSTCRELATAILKFGEVYERIEGKKQQMMI 202
Query: 387 DLEKQRMQFTKDLELQRMQMFMDTQVQLERIKRGKRSGSN 268
+LEKQRM+ TK++EL+RM M M+ Q+++E+ K KR+ ++
Sbjct: 203 ELEKQRMEVTKEVELKRMNMLMEMQLEIEKSKHRKRASAS 242
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 481,036,670
Number of Sequences: 1393205
Number of extensions: 11883273
Number of successful extensions: 114510
Number of sequences better than 10.0: 1069
Number of HSP's better than 10.0 without gapping: 58828
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92750
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17885181664
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
