Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005431A_C01 KMC005431A_c01
(492 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_567671.1| similar to putative transport protein; protein ... 100 9e-21
pir||T04579 hypothetical protein T12H17.230 - Arabidopsis thalia... 100 9e-21
ref|NP_567385.1| putative transport protein; protein id: At4g120... 97 7e-20
pir||T06610 hypothetical protein F16J13.100 - Arabidopsis thalia... 84 1e-15
ref|NP_714810.1| conserved hypothetical protein [Leptospira inte... 61 8e-09
>ref|NP_567671.1| similar to putative transport protein; protein id: At4g22840.1,
supported by cDNA: 9746., supported by cDNA: gi_17529349
[Arabidopsis thaliana] gi|17529350|gb|AAL38902.1|
unknown protein [Arabidopsis thaliana]
gi|21436155|gb|AAM51324.1| unknown protein [Arabidopsis
thaliana] gi|21618116|gb|AAM67166.1| unknown
[Arabidopsis thaliana]
Length = 409
Score = 100 bits (249), Expect = 9e-21
Identities = 48/83 (57%), Positives = 64/83 (76%)
Frame = -3
Query: 490 HLTSFIIGYIISGFTFRDSPDAKPLQRTISFEMGMQSSLLPLALANKLFEDPVVGIPSAI 311
HL++F+ GY ++G FR++PDAK +QRT+S+E GMQSSLL LALA K F+DP+VGIP AI
Sbjct: 326 HLSAFLAGYFLTGSVFRNAPDAKAMQRTLSYETGMQSSLLALALATKFFQDPLVGIPPAI 385
Query: 310 SSPLMSLMGFSLASDLVRRKKET 242
S+ +MSLMGF+L + K T
Sbjct: 386 STVVMSLMGFTLVLIWSKEKSNT 408
>pir||T04579 hypothetical protein T12H17.230 - Arabidopsis thaliana
gi|2827561|emb|CAA16569.1| predicted protein
[Arabidopsis thaliana] gi|3292809|emb|CAA19799.1|
putative protein [Arabidopsis thaliana]
gi|7269131|emb|CAB79239.1| predicted protein
[Arabidopsis thaliana]
Length = 460
Score = 100 bits (249), Expect = 9e-21
Identities = 48/83 (57%), Positives = 64/83 (76%)
Frame = -3
Query: 490 HLTSFIIGYIISGFTFRDSPDAKPLQRTISFEMGMQSSLLPLALANKLFEDPVVGIPSAI 311
HL++F+ GY ++G FR++PDAK +QRT+S+E GMQSSLL LALA K F+DP+VGIP AI
Sbjct: 377 HLSAFLAGYFLTGSVFRNAPDAKAMQRTLSYETGMQSSLLALALATKFFQDPLVGIPPAI 436
Query: 310 SSPLMSLMGFSLASDLVRRKKET 242
S+ +MSLMGF+L + K T
Sbjct: 437 STVVMSLMGFTLVLIWSKEKSNT 459
>ref|NP_567385.1| putative transport protein; protein id: At4g12030.1, supported by
cDNA: gi_15215838, supported by cDNA: gi_20453270
[Arabidopsis thaliana] gi|15215839|gb|AAK91464.1|
AT4g12030/F16J13_100 [Arabidopsis thaliana]
gi|20453271|gb|AAM19874.1| AT3g20560/K10D20_9
[Arabidopsis thaliana]
Length = 273
Score = 97.4 bits (241), Expect = 7e-20
Identities = 48/81 (59%), Positives = 60/81 (73%)
Frame = -3
Query: 490 HLTSFIIGYIISGFTFRDSPDAKPLQRTISFEMGMQSSLLPLALANKLFEDPVVGIPSAI 311
HL +F+ GY +GF F +PD K LQRTIS+E GMQSSLL LALA K F+DP+VG+P AI
Sbjct: 193 HLLAFVAGYFFTGFFFSKAPDVKALQRTISYETGMQSSLLALALATKFFQDPLVGVPPAI 252
Query: 310 SSPLMSLMGFSLASDLVRRKK 248
S+ +MSLMG SL + RK+
Sbjct: 253 STVVMSLMGVSLVTIWKNRKE 273
>pir||T06610 hypothetical protein F16J13.100 - Arabidopsis thaliana
gi|4586108|emb|CAB40944.1| putative transport protein
[Arabidopsis thaliana] gi|7267904|emb|CAB78246.1|
putative transport protein [Arabidopsis thaliana]
Length = 379
Score = 83.6 bits (205), Expect = 1e-15
Identities = 39/61 (63%), Positives = 47/61 (76%)
Frame = -3
Query: 490 HLTSFIIGYIISGFTFRDSPDAKPLQRTISFEMGMQSSLLPLALANKLFEDPVVGIPSAI 311
HL +F+ GY +GF F +PD K LQRTIS+E GMQSSLL LALA K F+DP+VG+P AI
Sbjct: 305 HLLAFVAGYFFTGFFFSKAPDVKALQRTISYETGMQSSLLALALATKFFQDPLVGVPPAI 364
Query: 310 S 308
S
Sbjct: 365 S 365
>ref|NP_714810.1| conserved hypothetical protein [Leptospira interrogans serovar lai
str. 56601] gi|24202399|gb|AAN51825.1|AE011614_2
conserved hypothetical protein [Leptospira interrogans
serovar lai str. 56601]
Length = 316
Score = 60.8 bits (146), Expect = 8e-09
Identities = 36/83 (43%), Positives = 51/83 (61%)
Frame = -3
Query: 490 HLTSFIIGYIISGFTFRDSPDAKPLQRTISFEMGMQSSLLPLALANKLFEDPVVGIPSAI 311
H++ F GY+IS R + + RTIS E+GMQ+S L + L+ F DP+V IP+AI
Sbjct: 235 HISGFFFGYVISWLFIRK----QKISRTISIEVGMQNSGLGVVLSRNNFPDPLVAIPAAI 290
Query: 310 SSPLMSLMGFSLASDLVRRKKET 242
SS + SL+G LA + +KET
Sbjct: 291 SSLVHSLIGSLLAVFWRKLEKET 313
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 413,676,703
Number of Sequences: 1393205
Number of extensions: 8712268
Number of successful extensions: 22918
Number of sequences better than 10.0: 66
Number of HSP's better than 10.0 without gapping: 22445
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22900
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 14203329973
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
