Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005427A_C01 KMC005427A_c01
(519 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAK19619.1|AF336286_1 GHMYB9 [Gossypium hirsutum] 96 2e-19
pir||S69189 myb-related protein TMH27 - tomato gi|1167484|emb|CA... 90 1e-17
pir||JQ0960 myb-related protein 308 - garden snapdragon 68 6e-11
gb|AAB23515.1| Myb oncoprotein homolog {clone 308} [Antirrhinum ... 68 6e-11
sp|P20026|MYB1_HORVU Myb-related protein Hv1 gi|2130044|pir||S61... 65 6e-10
>gb|AAK19619.1|AF336286_1 GHMYB9 [Gossypium hirsutum]
Length = 264
Score = 96.3 bits (238), Expect = 2e-19
Identities = 60/146 (41%), Positives = 83/146 (56%), Gaps = 30/146 (20%)
Frame = -2
Query: 518 PATHRPLNQEQSELAPAATTTTISF---KQDED----HEDNKPVFGEINKDSKGGSISIE 360
PATHRPLN+ ++ TTISF K++++ + +N P+ G I KD K + E
Sbjct: 123 PATHRPLNEASQDV------TTISFSGAKEEKEKINTNSNNNPI-GFITKDEKKIPVQ-E 174
Query: 359 RCPDLNLELTISPPHQPMIKKSS------SLCFDCSLGLQNSKDCTCEI----------- 231
RCPDLNL+L ISPP+ + S +LCF CSLG++NSKDCTC
Sbjct: 175 RCPDLNLDLRISPPYYQQTQPESFKTGGRTLCFICSLGVKNSKDCTCSTITTAAGSSSSS 234
Query: 230 ------NTAAGYDFMDLKTSVLDYRS 171
N ++GYDF+ LK+ +L+YRS
Sbjct: 235 SSHSNSNNSSGYDFLGLKSGILEYRS 260
>pir||S69189 myb-related protein TMH27 - tomato gi|1167484|emb|CAA64614.1|
transcription factor [Lycopersicon esculentum]
Length = 273
Score = 90.1 bits (222), Expect = 1e-17
Identities = 61/149 (40%), Positives = 79/149 (52%), Gaps = 33/149 (22%)
Frame = -2
Query: 518 PATHRPLNQEQSELAPAATTTTISFK----QDEDHEDN----KPVFGEINKDSKGGSISI 363
P THR +N + P TT T + +D D +D K F E +K+S I
Sbjct: 123 PTTHRSINDPTT--IPKVTTITFAAAHENIKDIDQQDEMINIKAEFVETSKESDNNEIIQ 180
Query: 362 ERC----PDLNLELTISPPHQPMI------KKSSSLCFDCSLGLQNSKDCTC-------- 237
E+ PDLNLEL ISPPH + ++SSSLCF CSLG+QNSKDC+C
Sbjct: 181 EKSSSCLPDLNLELRISPPHHQQLDHHRHHQRSSSLCFTCSLGIQNSKDCSCGSESNGNG 240
Query: 236 ------EINTAAGYDFMDLKTS-VLDYRS 171
+N AGYDF+ LKT+ +LDYR+
Sbjct: 241 WSNNMVSMNIMAGYDFLGLKTNGLLDYRT 269
>pir||JQ0960 myb-related protein 308 - garden snapdragon
Length = 232
Score = 68.2 bits (165), Expect = 6e-11
Identities = 46/107 (42%), Positives = 54/107 (49%), Gaps = 13/107 (12%)
Frame = -2
Query: 518 PATHRPLNQEQSELAPAATTTTISFKQ-DEDHEDNKPVFGEINKDSKGGSISIERCPDLN 342
P THR +N A TTISF + ED K + S ERCPDLN
Sbjct: 123 PTTHRSINDGT---ASQDQVTTISFSNANSKEEDTKHKVAVDIMIKEENSPVQERCPDLN 179
Query: 341 LELTISPP-------HQPMIKK-----SSSLCFDCSLGLQNSKDCTC 237
L+L ISPP HQ +K SS+LCF C LG+QNSKDC+C
Sbjct: 180 LDLKISPPCQQQINYHQENLKTGGRNGSSTLCFVCRLGIQNSKDCSC 226
>gb|AAB23515.1| Myb oncoprotein homolog {clone 308} [Antirrhinum majus=snapdragons,
Jl:522, flowers, Peptide Partial, 117 aa, segment 2 of
2]
Length = 117
Score = 68.2 bits (165), Expect = 6e-11
Identities = 46/107 (42%), Positives = 54/107 (49%), Gaps = 13/107 (12%)
Frame = -2
Query: 518 PATHRPLNQEQSELAPAATTTTISFKQ-DEDHEDNKPVFGEINKDSKGGSISIERCPDLN 342
P THR +N A TTISF + ED K + S ERCPDLN
Sbjct: 8 PTTHRSINDGT---ASQDQVTTISFSNANSKEEDTKHKVAVDIMIKEENSPVQERCPDLN 64
Query: 341 LELTISPP-------HQPMIKK-----SSSLCFDCSLGLQNSKDCTC 237
L+L ISPP HQ +K SS+LCF C LG+QNSKDC+C
Sbjct: 65 LDLKISPPCQQQINYHQENLKTGGRNGSSTLCFVCRLGIQNSKDCSC 111
>sp|P20026|MYB1_HORVU Myb-related protein Hv1 gi|2130044|pir||S61506 myb-related protein
1 - barley gi|19051|emb|CAA50222.1| MybHv1 [Hordeum
vulgare subsp. vulgare] gi|19053|emb|CAA50224.1| MybHv1
[Hordeum vulgare subsp. vulgare] gi|227030|prf||1613412A
myb-related gene Hv1
Length = 267
Score = 64.7 bits (156), Expect = 6e-10
Identities = 47/154 (30%), Positives = 69/154 (44%), Gaps = 38/154 (24%)
Frame = -2
Query: 518 PATHRPLNQEQSELAPAATTTTISFKQDEDHEDNKPVFGEINKDSKGGSISIE------- 360
P THR +N + AA+ TISF+ + +D VF + +K + +
Sbjct: 123 PVTHRAINSDH-----AASNITISFESAQ-RDDKGAVFRRDAEPAKAAAAAAAISHHVDH 176
Query: 359 ----------------RCPDLNLELTISPP--------HQPMIKKSSS-------LCFDC 273
+CPDLNL+L ISPP +P++K+ + LCF C
Sbjct: 177 HHRSNPQLDWGQGKPLKCPDLNLDLCISPPIHEDPMVDTKPVVKREAGVGVGVVGLCFSC 236
Query: 272 SLGLQNSKDCTCEINTAAGYDFMDLKTSVLDYRS 171
S+GL S DC C FM L+T++LD+RS
Sbjct: 237 SMGLPRSSDCKCS-------SFMGLRTAMLDFRS 263
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 416,602,764
Number of Sequences: 1393205
Number of extensions: 8508544
Number of successful extensions: 21616
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 21061
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21593
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16442828304
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
