Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005426A_C01 KMC005426A_c01
(561 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|P56821|IF39_TOBAC Eukaryotic translation initiation factor 3 ... 166 4e-42
ref|NP_568498.1| eukaryotic translation initiation factor 3b1 (e... 164 9e-40
ref|NP_568477.1| eukaryotic translation initiation factor 3b (eI... 155 4e-37
gb|AAF67758.1|AF255680_1 eIF3b [Arabidopsis thaliana] 155 4e-37
gb|AAL86464.1|AC077693_3 putative eukaryotic initiation factor s... 146 2e-34
>sp|P56821|IF39_TOBAC Eukaryotic translation initiation factor 3 subunit 9 (eIF-3 eta)
(eIF3 p110) (eIF3b) gi|5911685|emb|CAA72721.1| PRT1
protein [Nicotiana tabacum]
Length = 719
Score = 166 bits (420), Expect(3) = 4e-42
Identities = 73/94 (77%), Positives = 89/94 (94%)
Frame = -3
Query: 559 YRILKDHFFQFLWRPSPPSFLTPEQEEEIAKSLKKYSKKYEAEDQDVSLLLSEQEREKRR 380
YRILKDHFFQ+LWRP PPSFL+ E+EEEIAK+LK+YSKKYEAEDQDVSL LSEQ+REKR+
Sbjct: 596 YRILKDHFFQYLWRPRPPSFLSKEKEEEIAKNLKRYSKKYEAEDQDVSLQLSEQDREKRK 655
Query: 379 MLKEDWDKWVSEWKRMHEEEKLQREELRDGEASD 278
LKE+W+ W++EWKR+HEEEK++R++LRDGEASD
Sbjct: 656 KLKEEWEAWINEWKRLHEEEKMERQKLRDGEASD 689
Score = 26.2 bits (56), Expect(3) = 4e-42
Identities = 9/17 (52%), Positives = 15/17 (87%)
Frame = -2
Query: 248 LNLEEVIDVCEEVLPFE 198
+ +EE+I+V EE++PFE
Sbjct: 699 VEVEEIINVTEEIIPFE 715
Score = 21.6 bits (44), Expect(3) = 4e-42
Identities = 8/11 (72%), Positives = 10/11 (90%)
Frame = -1
Query: 276 EEEEYEARHLE 244
EEEEYEA+ +E
Sbjct: 690 EEEEYEAKEVE 700
>ref|NP_568498.1| eukaryotic translation initiation factor 3b1 (eIF3b1); protein id:
At5g27640.1, supported by cDNA: gi_12407661, supported
by cDNA: gi_14190410, supported by cDNA: gi_20857379
[Arabidopsis thaliana] gi|23396618|sp|Q9C5Z1|IF39_ARATH
Eukaryotic translation initiation factor 3 subunit 9
(eIF-3 eta) (eIF3 p110) (eIF3b) (p82)
gi|12407662|gb|AAG53615.1|AF285834_1 eukaryotic
initiation factor 3B1 subunit [Arabidopsis thaliana]
gi|14190411|gb|AAK55686.1|AF378883_1
AT5g27640/F15A18_100 [Arabidopsis thaliana]
gi|20857380|gb|AAM26716.1| AT5g27640/F15A18_100
[Arabidopsis thaliana]
Length = 712
Score = 164 bits (414), Expect = 9e-40
Identities = 75/94 (79%), Positives = 84/94 (88%)
Frame = -3
Query: 559 YRILKDHFFQFLWRPSPPSFLTPEQEEEIAKSLKKYSKKYEAEDQDVSLLLSEQEREKRR 380
YRILKDHFFQ WRP PPSFLT E+EEEIAK+LKKYSKKYEAEDQDVSLLLSEQ+REKR+
Sbjct: 592 YRILKDHFFQLAWRPRPPSFLTAEKEEEIAKTLKKYSKKYEAEDQDVSLLLSEQDREKRK 651
Query: 379 MLKEDWDKWVSEWKRMHEEEKLQREELRDGEASD 278
LKE+W+KWV +WK +HEEEKL R+ LRDGE SD
Sbjct: 652 ALKEEWEKWVMQWKSLHEEEKLVRQNLRDGEVSD 685
>ref|NP_568477.1| eukaryotic translation initiation factor 3b (eIF3b/PRT1); protein
id: At5g25780.1, supported by cDNA: gi_7689382
[Arabidopsis thaliana] gi|27311575|gb|AAO00753.1|
eukaryotic translation initiation factor - like protein
[Arabidopsis thaliana]
Length = 714
Score = 155 bits (391), Expect = 4e-37
Identities = 71/94 (75%), Positives = 80/94 (84%)
Frame = -3
Query: 559 YRILKDHFFQFLWRPSPPSFLTPEQEEEIAKSLKKYSKKYEAEDQDVSLLLSEQEREKRR 380
YRILKDHFFQ WRP P SFLT E+EEEIAK+L+ YSK+YEAEDQDVSLLLSEQ+REKRR
Sbjct: 593 YRILKDHFFQLAWRPRPASFLTAEKEEEIAKNLRNYSKRYEAEDQDVSLLLSEQDREKRR 652
Query: 379 MLKEDWDKWVSEWKRMHEEEKLQREELRDGEASD 278
L E+W KWV +WK +HEEEKL R+ LRDGE SD
Sbjct: 653 ALNEEWQKWVMQWKSLHEEEKLVRQNLRDGEVSD 686
>gb|AAF67758.1|AF255680_1 eIF3b [Arabidopsis thaliana]
Length = 716
Score = 155 bits (391), Expect = 4e-37
Identities = 71/94 (75%), Positives = 80/94 (84%)
Frame = -3
Query: 559 YRILKDHFFQFLWRPSPPSFLTPEQEEEIAKSLKKYSKKYEAEDQDVSLLLSEQEREKRR 380
YRILKDHFFQ WRP P SFLT E+EEEIAK+L+ YSK+YEAEDQDVSLLLSEQ+REKRR
Sbjct: 595 YRILKDHFFQLAWRPRPASFLTAEKEEEIAKNLRNYSKRYEAEDQDVSLLLSEQDREKRR 654
Query: 379 MLKEDWDKWVSEWKRMHEEEKLQREELRDGEASD 278
L E+W KWV +WK +HEEEKL R+ LRDGE SD
Sbjct: 655 ALNEEWQKWVMQWKSLHEEEKLVRQNLRDGEVSD 688
>gb|AAL86464.1|AC077693_3 putative eukaryotic initiation factor subunit [Oryza sativa
(japonica cultivar-group)]
Length = 719
Score = 146 bits (368), Expect = 2e-34
Identities = 64/94 (68%), Positives = 81/94 (86%)
Frame = -3
Query: 559 YRILKDHFFQFLWRPSPPSFLTPEQEEEIAKSLKKYSKKYEAEDQDVSLLLSEQEREKRR 380
Y++ KDHFFQFLWRP PPS LTPE+E+EIAK+L+KYSKKYE EDQD LSEQER++R+
Sbjct: 597 YKVSKDHFFQFLWRPRPPSLLTPEKEDEIAKNLRKYSKKYEQEDQDAFNQLSEQERKRRK 656
Query: 379 MLKEDWDKWVSEWKRMHEEEKLQREELRDGEASD 278
L+E+W+ WV++WK++HEEE+ R ELRDGEASD
Sbjct: 657 QLQEEWEGWVAKWKQLHEEERPYRMELRDGEASD 690
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 470,106,198
Number of Sequences: 1393205
Number of extensions: 10219673
Number of successful extensions: 53509
Number of sequences better than 10.0: 376
Number of HSP's better than 10.0 without gapping: 45349
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51492
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20095422690
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
