Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005425A_C01 KMC005425A_c01
(546 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_176841.1| pheromone receptor, putative (AR401); protein i... 109 1e-24
dbj|BAA13688.1| AR401 [Arabidopsis thaliana] 109 1e-24
gb|AAM65478.1| pheromone receptor, putative (AR401) [Arabidopsis... 107 5e-24
gb|AAO64803.1| At1g66680 [Arabidopsis thaliana] 101 5e-21
pir||T08201 S locus-linked protein SLL2 - rape gi|1518113|gb|AAB... 96 2e-20
>ref|NP_176841.1| pheromone receptor, putative (AR401); protein id: At1g66680.1,
supported by cDNA: 3969., supported by cDNA: gi_1669600
[Arabidopsis thaliana]
gi|12597759|gb|AAG60072.1|AC013288_6 pheromone receptor,
putative (AR401) [Arabidopsis thaliana]
Length = 358
Score = 109 bits (273), Expect(2) = 1e-24
Identities = 63/130 (48%), Positives = 77/130 (58%), Gaps = 2/130 (1%)
Frame = +1
Query: 163 SWSIKSEVRQ--HSRRRPAPRRRRRSSLQRQSPSSLRLQLVIRKNRDAESSGDQVAGAFQ 336
SWSIKSE +R A SS + S ++ DA+ G + G Q
Sbjct: 45 SWSIKSEYGSTLDDDQRHADAAEALSSANFRVSSDYSSD---KEEPDADGGGQSMLG-LQ 100
Query: 337 SYWDAAYSDELTNFREHGHAGEVGFGVDVMEVVASWTRALCIDISQGRLPNHTDDVKAEA 516
SYWDAAYSDELTNFREHGHAGEV FG DVME+V SWT+ LC++ISQ + +DV E
Sbjct: 101 SYWDAAYSDELTNFREHGHAGEVWFGDDVMEIVTSWTKDLCVEISQRNMSVSENDVTTEV 160
Query: 517 SELGDKILSS 546
++ DK LSS
Sbjct: 161 NDQADKYLSS 170
Score = 25.0 bits (53), Expect(2) = 1e-24
Identities = 16/27 (59%), Positives = 19/27 (70%), Gaps = 4/27 (14%)
Frame = +3
Query: 90 QQVRS---VSLSTAD-LVSDDDRSIAA 158
QQ R+ V+ +T D L SDDDRSIAA
Sbjct: 17 QQARAAAAVTTTTTDSLASDDDRSIAA 43
>dbj|BAA13688.1| AR401 [Arabidopsis thaliana]
Length = 317
Score = 109 bits (273), Expect(2) = 1e-24
Identities = 63/130 (48%), Positives = 77/130 (58%), Gaps = 2/130 (1%)
Frame = +1
Query: 163 SWSIKSEVRQ--HSRRRPAPRRRRRSSLQRQSPSSLRLQLVIRKNRDAESSGDQVAGAFQ 336
SWSIKSE +R A SS + S ++ DA+ G + G Q
Sbjct: 45 SWSIKSEYGSTLDDDQRHADAAEALSSANFRVSSDYSSD---KEEPDADGGGQSMLG-LQ 100
Query: 337 SYWDAAYSDELTNFREHGHAGEVGFGVDVMEVVASWTRALCIDISQGRLPNHTDDVKAEA 516
SYWDAAYSDELTNFREHGHAGEV FG DVME+V SWT+ LC++ISQ + +DV E
Sbjct: 101 SYWDAAYSDELTNFREHGHAGEVWFGDDVMEIVTSWTKDLCVEISQRNMSVSENDVTTEV 160
Query: 517 SELGDKILSS 546
++ DK LSS
Sbjct: 161 NDQADKYLSS 170
Score = 25.0 bits (53), Expect(2) = 1e-24
Identities = 16/27 (59%), Positives = 19/27 (70%), Gaps = 4/27 (14%)
Frame = +3
Query: 90 QQVRS---VSLSTAD-LVSDDDRSIAA 158
QQ R+ V+ +T D L SDDDRSIAA
Sbjct: 17 QQARAAAAVTTTTTDSLASDDDRSIAA 43
>gb|AAM65478.1| pheromone receptor, putative (AR401) [Arabidopsis thaliana]
Length = 358
Score = 107 bits (267), Expect(2) = 5e-24
Identities = 60/131 (45%), Positives = 79/131 (59%), Gaps = 3/131 (2%)
Frame = +1
Query: 163 SWSIKSEVRQHSRRRPAPRRRRRSSLQRQSPSSLRLQLVIRKNRD---AESSGDQVAGAF 333
SWSIKSE +R + + S ++ R+ +++ A+ G + G
Sbjct: 45 SWSIKSEYGSTLD----DDQRHADAAEALSSANFRVSSDYSSDKEESGADGGGQSMLG-L 99
Query: 334 QSYWDAAYSDELTNFREHGHAGEVGFGVDVMEVVASWTRALCIDISQGRLPNHTDDVKAE 513
QSYWDAAYSDELTNFREHGHAGEV FG DVME+V SWT+ LC++ISQ + +DV E
Sbjct: 100 QSYWDAAYSDELTNFREHGHAGEVWFGDDVMEIVTSWTKDLCVEISQRNMSVSENDVTTE 159
Query: 514 ASELGDKILSS 546
++ DK LSS
Sbjct: 160 VNDQADKYLSS 170
Score = 25.0 bits (53), Expect(2) = 5e-24
Identities = 16/27 (59%), Positives = 19/27 (70%), Gaps = 4/27 (14%)
Frame = +3
Query: 90 QQVRS---VSLSTAD-LVSDDDRSIAA 158
QQ R+ V+ +T D L SDDDRSIAA
Sbjct: 17 QQARAAAAVTTTTTDSLASDDDRSIAA 43
>gb|AAO64803.1| At1g66680 [Arabidopsis thaliana]
Length = 263
Score = 101 bits (252), Expect = 5e-21
Identities = 47/71 (66%), Positives = 55/71 (77%)
Frame = +1
Query: 334 QSYWDAAYSDELTNFREHGHAGEVGFGVDVMEVVASWTRALCIDISQGRLPNHTDDVKAE 513
QSYWDAAYSDELTNFREHGHAGEV FG DVME+V SWT+ LC++ISQ + +DV E
Sbjct: 5 QSYWDAAYSDELTNFREHGHAGEVWFGDDVMEIVTSWTKDLCVEISQRNMSVSENDVTTE 64
Query: 514 ASELGDKILSS 546
++ DK LSS
Sbjct: 65 VNDQADKYLSS 75
>pir||T08201 S locus-linked protein SLL2 - rape gi|1518113|gb|AAB49423.1| SLL2
Length = 337
Score = 95.9 bits (237), Expect(2) = 2e-20
Identities = 55/129 (42%), Positives = 75/129 (57%), Gaps = 1/129 (0%)
Frame = +1
Query: 163 SWSIKSEVRQHSRRRPAPRRRRRSSLQRQSPSSLRLQLVIRKNRDA-ESSGDQVAGAFQS 339
SWSIKSE +R + + S ++ R+ +++ ++ G Q QS
Sbjct: 38 SWSIKSEYGSTLD----DDQRHADAAEALSSANFRVSSDYSSDKEEPDADGGQSMLGLQS 93
Query: 340 YWDAAYSDELTNFREHGHAGEVGFGVDVMEVVASWTRALCIDISQGRLPNHTDDVKAEAS 519
YWDAAYSDEL+NFREHGH GEV FG DVME+V SWT+ LC++ISQ + + E +
Sbjct: 94 YWDAAYSDELSNFREHGHTGEVWFGDDVMEIVTSWTKDLCVEISQKEM---SVSDNGEVN 150
Query: 520 ELGDKILSS 546
+ DK LSS
Sbjct: 151 DQADKYLSS 159
Score = 24.3 bits (51), Expect(2) = 2e-20
Identities = 11/15 (73%), Positives = 12/15 (79%)
Frame = +3
Query: 114 STADLVSDDDRSIAA 158
+T L SDDDRSIAA
Sbjct: 22 TTDSLASDDDRSIAA 36
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.316 0.131 0.392
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 517,319,906
Number of Sequences: 1393205
Number of extensions: 12694557
Number of successful extensions: 81749
Number of sequences better than 10.0: 424
Number of HSP's better than 10.0 without gapping: 60215
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78703
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 18660035355
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
