Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005422A_C01 KMC005422A_c01
(522 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_622225.1| 3-oxoacyl-(acyl-carrier-protein) synthase III [... 33 2.6
ref|XP_151799.1| hypothetical protein XP_151799 [Mus musculus] 32 5.8
>ref|NP_622225.1| 3-oxoacyl-(acyl-carrier-protein) synthase III [Thermoanaerobacter
tengcongensis] gi|20515542|gb|AAM23829.1|
3-oxoacyl-(acyl-carrier-protein) synthase III
[Thermoanaerobacter tengcongensis]
Length = 342
Score = 32.7 bits (73), Expect = 2.6
Identities = 19/49 (38%), Positives = 27/49 (54%)
Frame = -1
Query: 426 GLAHAVNDNAKSVLSLESNIRTLRASNDYRRIDPIPRIEYKDPRVSKYY 280
G A A AK ++ + NI T+ + YR +D I+YK+PRVS Y
Sbjct: 119 GTAVAALKIAKDMMIADDNINTVLIAGGYRNVD---FIDYKNPRVSFMY 164
>ref|XP_151799.1| hypothetical protein XP_151799 [Mus musculus]
Length = 611
Score = 31.6 bits (70), Expect = 5.8
Identities = 28/94 (29%), Positives = 41/94 (42%), Gaps = 4/94 (4%)
Frame = +1
Query: 103 RLTRVNPYIQSEGLDRFGGSHSGTRESLYSIRWIG----SIQPSPYKLA*VREFNPRDWT 270
RLTR+ + Q+E GS SL +I+ I ++ +P+K A V E PR
Sbjct: 105 RLTRIRWWDQNELHQELNGSSRIKHSSLCTIQLIDIHTENLARAPFKRA-VVETMPRSGK 163
Query: 271 DSAIIFRHARILIFNPRDWIDSAIVIRRAQRPYV 372
+ H I + PRDW + + QR V
Sbjct: 164 GPGPLEAHWGITLQGPRDWRKEHLALITEQRDRV 197
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 447,715,872
Number of Sequences: 1393205
Number of extensions: 9369568
Number of successful extensions: 22011
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 20881
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21997
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16731298976
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
